Started by upstream project "BIOFORMATS-test-repo" build number 207
originally caused by:
Started by upstream project "Trigger" build number 233
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins6466261864785892768.sh
+ '[' metamorph = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32865_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:06:06,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:06:06,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 05:06:06,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:06:06,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:06:06,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:06:06,748 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:06:06,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:06:06,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:06:06,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:06:06,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:06:06,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:06:06,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:06:06,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:06:06,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:06:06,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:06:06,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:06:06,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:06:06,929 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:06:06,929 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:06:06,929 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:06:06,929 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 05:06:06,930 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 05:06:06,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-02 05:06:06,939] [main] java.version = 17.0.2
[testng] 05:06:06,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:06:06,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:06,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_05-06-06.log]
[testng] 05:06:06,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-10-02 05:06:06,984] [main] testng.directory = /data
[testng] [2024-10-02 05:06:06,985] [main] testng.configDirectory = /config
[testng] [2024-10-02 05:06:06,993] [main] testng.multiplier = 1.0
[testng] [2024-10-02 05:06:06,994] [main] testng.in-memory = false
[testng] [2024-10-02 05:06:06,994] [main] testng.allow-missing = false
[testng] [2024-10-02 05:06:06,994] [main] user.language = en
[testng] [2024-10-02 05:06:06,994] [main] user.country = ${user.country}
[testng] [2024-10-02 05:06:06,994] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-02 05:32:39,275] [main] ----------------------------------------
[testng] [2024-10-02 05:32:39,275] [main] Total files: 7329
[testng] [2024-10-02 05:32:39,275] [main] Scan time: 1592.281 s (217 ms/file)
[testng] [2024-10-02 05:32:39,275] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 209 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-02 06:01:13,079] [pool-1-thread-1] Initializing /data/samples/zser24.stk:
[testng] 06:01:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:01:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:13,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_06-01-13.log]
[testng] 06:01:13,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d05a4f9 - End of configuration.
[testng] [2024-10-02 06:01:17,993] [pool-1-thread-12] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF:
[testng] 06:01:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:01:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:17,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_06-01-17.log]
[testng] 06:01:17,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b5155 - End of configuration.
[testng] [2024-10-02 06:01:26,171] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif:
[testng] 06:01:26,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:01:26,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:26,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_06-01-26.log]
[testng] 06:01:26,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39953356 - End of configuration.
[testng] [2024-10-02 06:01:30,112] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF:
[testng] 06:01:30,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:01:30,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:30,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_06-01-30.log]
[testng] 06:01:30,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@503dc9cb - End of configuration.
[testng] [2024-10-02 06:01:34,896] [pool-1-thread-10] Used files list does not include base file
[testng] [2024-10-02 06:01:34,898] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif:
[testng] 06:01:34,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:01:34,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:34,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_06-01-34.log]
[testng] 06:01:34,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e56830 - End of configuration.
[testng] [2024-10-02 06:01:38,401] [pool-1-thread-8] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK:
[testng] 06:01:38,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:01:38,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:38,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_06-01-38.log]
[testng] 06:01:38,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6274ac92 - End of configuration.
[testng] [2024-10-02 06:01:41,832] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif:
[testng] 06:01:41,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:01:41,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:41,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_06-01-41.log]
[testng] 06:01:41,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ddf75 - End of configuration.
[testng] [2024-10-02 06:01:45,205] [pool-1-thread-7] Used files list does not include base file
[testng] [2024-10-02 06:01:45,207] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400b.stk:
[testng] 06:01:45,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:01:45,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:01:45,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_06-01-45.log]
[testng] 06:01:45,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4557c0c9 - End of configuration.
[testng] [2024-10-02 06:02:18,971] [pool-1-thread-5] Initializing /data/samples/zserEight.stk:
[testng] 06:02:18,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:02:18,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:18,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_06-02-18.log]
[testng] 06:02:18,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9b3bb2 - End of configuration.
[testng] [2024-10-02 06:02:21,876] [pool-1-thread-4] Initializing /data/thomas/test.tif:
[testng] 06:02:21,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:02:21,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:21,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_06-02-21.log]
[testng] 06:02:21,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec7ccf - End of configuration.
[testng] [2024-10-02 06:02:24,826] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk:
[testng] 06:02:24,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:02:24,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:24,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_06-02-24.log]
[testng] 06:02:24,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec86d26 - End of configuration.
[testng] [2024-10-02 06:02:31,665] [pool-1-thread-2] Initializing /data/josh/2101to600e.stk:
[testng] 06:02:31,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:02:31,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:31,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_06-02-31.log]
[testng] 06:02:31,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2d63b9 - End of configuration.
[testng] [2024-10-02 06:03:04,748] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif:
[testng] [2024-10-02 06:03:07,882] [pool-1-thread-1] Initializing /data/ascb/C1 Stack.stk:
[testng] [2024-10-02 06:03:10,854] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:03:14,099] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF:
[testng] [2024-10-02 06:03:17,877] [pool-1-thread-4] Used files list does not include base file
[testng] [2024-10-02 06:03:17,878] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif:
[testng] [2024-10-02 06:03:21,593] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk:
[testng] [2024-10-02 06:03:41,009] [pool-1-thread-5] Initializing /data/jae/RGB_s34.tif:
[testng] [2024-10-02 06:03:45,757] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif:
[testng] [2024-10-02 06:03:49,255] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600f.stk:
[testng] [2024-10-02 06:04:06,353] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif:
[testng] [2024-10-02 06:04:10,133] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK:
[testng] [2024-10-02 06:04:41,343] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif:
[testng] [2024-10-02 06:04:49,187] [pool-1-thread-5] Initializing /data/ascb/golgi marker.tif:
[testng] [2024-10-02 06:04:53,810] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:05:01,285] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF:
[testng] [2024-10-02 06:05:10,815] [pool-1-thread-11] Initializing /data/qa-16887/m-01.tif:
[testng] [2024-10-02 06:05:18,008] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:05:23,073] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF:
[testng] [2024-10-02 06:05:28,113] [pool-1-thread-2] Used files list does not include base file
[testng] [2024-10-02 06:05:29,966] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF:
[testng] [2024-10-02 06:05:35,571] [pool-1-thread-5] Used files list does not include base file
[testng] [2024-10-02 06:05:37,840] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk:
[testng] [2024-10-02 06:05:43,871] [pool-1-thread-7] Used files list does not include base file
[testng] [2024-10-02 06:05:54,512] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk:
[testng] [2024-10-02 06:06:02,218] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:06:07,700] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk:
[testng] [2024-10-02 06:06:14,700] [pool-1-thread-3] Initializing /data/jerome/deconv.STK:
[testng] [2024-10-02 06:06:23,192] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF:
[testng] [2024-10-02 06:06:27,271] [pool-1-thread-10] Initializing /data/josh/2101to600astk.stk:
[testng] [2024-10-02 06:07:21,946] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF:
[testng] [2024-10-02 06:07:24,766] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif:
[testng] [2024-10-02 06:07:27,444] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF:
[testng] [2024-10-02 06:07:30,029] [pool-1-thread-9] Initializing /data/qa-30870/220209_posit5.tif:
[testng] [2024-10-02 06:07:34,496] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk:
[testng] [2024-10-02 06:07:42,884] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:07:48,872] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK:
[testng] [2024-10-02 06:07:52,121] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg:
[testng] [2024-10-02 06:07:52,549] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:07:55,681] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF:
[testng] [2024-10-02 06:07:59,082] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif:
[testng] [2024-10-02 06:08:01,976] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk:
[testng] [2024-10-02 06:08:12,707] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif:
[testng] [2024-10-02 06:08:21,244] [pool-1-thread-3] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF:
[testng] [2024-10-02 06:08:51,167] [pool-1-thread-7] Initializing /data/grant/X.STK:
[testng] [2024-10-02 06:08:54,556] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif:
[testng] [2024-10-02 06:09:00,764] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF:
[testng] [2024-10-02 06:09:06,565] [pool-1-thread-4] Used files list does not include base file
[testng] [2024-10-02 06:09:06,620] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk:
[testng] [2024-10-02 06:09:26,630] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF:
[testng] [2024-10-02 06:09:29,696] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk:
[testng] [2024-10-02 06:09:36,367] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF:
[testng] [2024-10-02 06:09:40,432] [pool-1-thread-1] Used files list does not include base file
[testng] [2024-10-02 06:09:41,645] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:09:44,527] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif:
[testng] [2024-10-02 06:09:47,389] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK:
[testng] [2024-10-02 06:09:58,650] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK:
[testng] [2024-10-02 06:10:51,360] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF:
[testng] [2024-10-02 06:10:54,404] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif:
[testng] [2024-10-02 06:10:58,101] [pool-1-thread-8] Used files list does not include base file
[testng] [2024-10-02 06:10:58,128] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600e.stk:
[testng] [2024-10-02 06:11:19,363] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001:
[testng] [2024-10-02 06:11:33,726] [pool-1-thread-8] Initializing /data/ascb/mt aim.tif:
[testng] [2024-10-02 06:11:35,657] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif:
[testng] [2024-10-02 06:11:54,040] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK:
[testng] [2024-10-02 06:11:58,017] [pool-1-thread-6] Initializing /data/graham/G_Wright deconvolved.stk:
[testng] [2024-10-02 06:12:27,253] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF:
[testng] [2024-10-02 06:12:35,153] [pool-1-thread-11] Used files list does not include base file
[testng] [2024-10-02 06:12:35,432] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF:
[testng] [2024-10-02 06:12:37,972] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF:
[testng] [2024-10-02 06:12:45,270] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF:
[testng] [2024-10-02 06:12:47,394] [pool-1-thread-1] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk:
[testng] [2024-10-02 06:12:49,974] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk:
[testng] [2024-10-02 06:13:05,849] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF:
[testng] [2024-10-02 06:13:09,029] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif:
[testng] [2024-10-02 06:13:13,602] [pool-1-thread-12] Initializing /data/josh/2101to800.stk:
[testng] [2024-10-02 06:13:27,541] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk:
[testng] [2024-10-02 06:13:34,036] [pool-1-thread-5] Initializing /data/josh/2101to400bstk.stk:
[testng] [2024-10-02 06:14:36,111] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF:
[testng] [2024-10-02 06:14:41,205] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:14:43,155] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk:
[testng] [2024-10-02 06:14:53,792] [pool-1-thread-4] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK:
[testng] [2024-10-02 06:14:59,327] [pool-1-thread-6] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF:
[testng] [2024-10-02 06:15:02,227] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg:
[testng] [2024-10-02 06:15:07,870] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:15:15,027] [pool-1-thread-8] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF:
[testng] [2024-10-02 06:15:31,327] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF:
[testng] [2024-10-02 06:15:34,036] [pool-1-thread-10] Used files list does not include base file
[testng] [2024-10-02 06:15:34,092] [pool-1-thread-11] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk:
[testng] [2024-10-02 06:15:49,993] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif:
[testng] [2024-10-02 06:15:55,550] [pool-1-thread-9] Used files list does not include base file
[testng] [2024-10-02 06:15:55,551] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg:
[testng] [2024-10-02 06:16:00,083] [pool-1-thread-4] Initializing /data/steve/Experiment2.stk:
[testng] [2024-10-02 06:16:05,055] [pool-1-thread-6] Initializing /data/alex/Selected FITC.stk:
[testng] [2024-10-02 06:16:06,856] [pool-1-thread-1] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif:
[testng] [2024-10-02 06:16:08,530] [pool-1-thread-12] Initializing /data/qa-16915/m-04.tif:
[testng] [2024-10-02 06:16:17,673] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF:
[testng] [2024-10-02 06:16:24,945] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif:
[testng] [2024-10-02 06:16:28,512] [pool-1-thread-1] Initializing /data/qa-16915/m-02.tif:
[testng] [2024-10-02 06:16:33,053] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK:
[testng] [2024-10-02 06:16:36,061] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:16:47,280] [pool-1-thread-6] Initializing /data/david/tl4.tif:
[testng] [2024-10-02 06:17:01,003] [pool-1-thread-12] Initializing /data/samples/single-series-test/test_w1.TIF:
[testng] [2024-10-02 06:17:06,896] [pool-1-thread-1] Initializing /data/qa-16915/m-01.tif:
[testng] [2024-10-02 06:17:25,383] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF:
[testng] [2024-10-02 06:17:29,023] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk:
[testng] [2024-10-02 06:17:33,063] [pool-1-thread-12] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF:
[testng] [2024-10-02 06:17:37,802] [pool-1-thread-9] Initializing /data/aaron/metamorph.stk:
[testng] [2024-10-02 06:17:45,424] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk:
[testng] [2024-10-02 06:17:51,204] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:17:56,737] [pool-1-thread-12] Initializing /data/qa-16915/m-02-561.ome.tif:
[testng] [2024-10-02 06:17:58,432] [pool-1-thread-9] Initializing /data/qa-16915/m-01-488.ome.tif:
[testng] [2024-10-02 06:18:02,960] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif:
[testng] [2024-10-02 06:18:05,785] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF:
[testng] [2024-10-02 06:18:09,906] [pool-1-thread-10] Used files list does not include base file
[testng] [2024-10-02 06:18:15,668] [pool-1-thread-9] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif:
[testng] [2024-10-02 06:19:05,790] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif:
[testng] [2024-10-02 06:19:07,550] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF:
[testng] [2024-10-02 06:19:09,927] [pool-1-thread-4] Used files list does not include base file
[testng] [2024-10-02 06:19:09,946] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif:
[testng] [2024-10-02 06:19:11,634] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF:
[testng] [2024-10-02 06:19:19,231] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif:
[testng] [2024-10-02 06:19:21,058] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF:
[testng] [2024-10-02 06:19:24,233] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif:
[testng] [2024-10-02 06:19:36,725] [pool-1-thread-12] Initializing /data/qa-16907/1_w1Single SPI 405.TIF:
[testng] [2024-10-02 06:19:40,142] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif:
[testng] [2024-10-02 06:20:20,556] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk:
[testng] [2024-10-02 06:20:32,035] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF:
[testng] [2024-10-02 06:20:38,809] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF:
[testng] [2024-10-02 06:20:50,384] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif:
[testng] [2024-10-02 06:21:06,561] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk:
[testng] [2024-10-02 06:21:10,733] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk:
[testng] [2024-10-02 06:21:13,661] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK:
[testng] [2024-10-02 06:21:23,679] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk:
[testng] [2024-10-02 06:21:26,383] [pool-1-thread-4] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF:
[testng] [2024-10-02 06:21:29,845] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:21:40,137] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF:
[testng] [2024-10-02 06:21:46,446] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif:
[testng] [2024-10-02 06:21:50,181] [pool-1-thread-6] Initializing /data/qa-16915/m-02-488.ome.tif:
[testng] [2024-10-02 06:21:58,798] [pool-1-thread-4] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF:
[testng] [2024-10-02 06:22:06,656] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF:
[testng] [2024-10-02 06:22:12,251] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif:
[testng] [2024-10-02 06:22:14,864] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK:
[testng] [2024-10-02 06:22:19,470] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk:
[testng] [2024-10-02 06:22:45,525] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF:
[testng] [2024-10-02 06:22:48,251] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF:
[testng] [2024-10-02 06:22:52,733] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif:
[testng] [2024-10-02 06:22:55,041] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk:
[testng] [2024-10-02 06:23:01,419] [pool-1-thread-7] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF:
[testng] [2024-10-02 06:23:09,246] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif:
[testng] [2024-10-02 06:23:24,240] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk:
[testng] [2024-10-02 06:23:35,654] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif:
[testng] [2024-10-02 06:23:37,919] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF:
[testng] [2024-10-02 06:23:43,315] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk:
[testng] [2024-10-02 06:23:57,300] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF:
[testng] [2024-10-02 06:23:59,797] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif:
[testng] [2024-10-02 06:24:11,081] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:24:28,431] [pool-1-thread-2] Initializing /data/ascb/golgi marker 2.tif:
[testng] [2024-10-02 06:24:31,875] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF:
[testng] [2024-10-02 06:24:40,889] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif:
[testng] [2024-10-02 06:27:04,201] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600b.stk:
[testng] [2024-10-02 06:27:14,165] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg:
[testng] [2024-10-02 06:27:19,934] [pool-1-thread-1] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk:
[testng] [2024-10-02 06:27:21,638] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF:
[testng] [2024-10-02 06:27:33,152] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk:
[testng] [2024-10-02 06:28:10,156] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF:
[testng] [2024-10-02 06:28:17,645] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF:
[testng] [2024-10-02 06:28:21,530] [pool-1-thread-6] Used files list does not include base file
[testng] [2024-10-02 06:28:45,496] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif:
[testng] [2024-10-02 06:28:53,883] [pool-1-thread-2] Initializing /data/stephane/Lame7-E5-Y+-001.stk:
[testng] [2024-10-02 06:29:02,201] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk:
[testng] [2024-10-02 06:29:06,838] [pool-1-thread-2] Initializing /data/josh/2101to600f.stk:
[testng] [2024-10-02 06:29:40,260] [pool-1-thread-1] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif:
[testng] [2024-10-02 06:29:51,763] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF:
[testng] [2024-10-02 06:29:54,800] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif:
[testng] [2024-10-02 06:30:08,912] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF:
[testng] [2024-10-02 06:30:16,597] [pool-1-thread-4] Initializing /data/grant/XYZ_Image.STK:
[testng] [2024-10-02 06:30:21,667] [pool-1-thread-1] Initializing /data/dave/Z Series.stk:
[testng] [2024-10-02 06:30:32,690] [pool-1-thread-6] Initializing /data/thomas/t_test2001.tif:
[testng] [2024-10-02 06:30:35,413] [pool-1-thread-1] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk:
[testng] [2024-10-02 06:30:43,801] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk:
[testng] [2024-10-02 06:30:46,603] [pool-1-thread-12] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif:
[testng] [2024-10-02 06:30:49,885] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF:
[testng] [2024-10-02 06:30:59,857] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk:
[testng] [2024-10-02 06:31:04,357] [pool-1-thread-4] Initializing /data/samples/zserSixteen.stk:
[testng] [2024-10-02 06:31:06,373] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:31:17,231] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif:
[testng] [2024-10-02 06:31:21,146] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to400a.stk:
[testng] [2024-10-02 06:31:32,783] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:31:51,060] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk:
[testng] [2024-10-02 06:31:58,217] [pool-1-thread-10] Initializing /data/samples/zseries.stk:
[testng] [2024-10-02 06:32:05,767] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t1.stk:
[testng] [2024-10-02 06:32:09,284] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF:
[testng] [2024-10-02 06:32:13,978] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF:
[testng] [2024-10-02 06:32:16,043] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif:
[testng] [2024-10-02 06:32:21,271] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif:
[testng] [2024-10-02 06:32:23,233] [pool-1-thread-4] Used files list does not include base file
[testng] [2024-10-02 06:32:25,077] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF:
[testng] [2024-10-02 06:32:28,112] [pool-1-thread-2] Used files list does not include base file
[testng] [2024-10-02 06:32:31,280] [pool-1-thread-10] Initializing /data/chris/Stream-2(partial).stk:
[testng] [2024-10-02 06:32:38,260] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF:
[testng] [2024-10-02 06:32:46,590] [pool-1-thread-6] Initializing /data/qa-16915/m-04-561.tif:
[testng] [2024-10-02 06:33:10,436] [pool-1-thread-1] Initializing /data/chris/exp1_w1_s1_t1.tif:
[testng] [2024-10-02 06:33:13,453] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF:
[testng] [2024-10-02 06:33:18,350] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif:
[testng] [2024-10-02 06:33:21,492] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 1.tif:
[testng] [2024-10-02 06:33:33,852] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif:
[testng] [2024-10-02 06:33:39,683] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk:
[testng] [2024-10-02 06:33:43,550] [pool-1-thread-10] Initializing /data/josh/2101to400astk.stk:
[testng] [2024-10-02 06:34:04,926] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif:
[testng] [2024-10-02 06:34:10,628] [pool-1-thread-6] Initializing /data/ascb/mt mklp1.tif:
[testng] [2024-10-02 06:34:15,626] [pool-1-thread-11] Initializing /data/samples/diatoms3d.stk:
FATAL: command execution failed
java.nio.channels.ClosedChannelException
at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
at hudson.remoting.Channel.close(Channel.java:1497)
at hudson.remoting.Channel.close(Channel.java:1450)
at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
at hudson.model.Queue._withLock(Queue.java:1401)
at hudson.model.Queue.withLock(Queue.java:1275)
at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.Server.doStop(Server.java:517)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at winstone.Launcher.shutdown(Launcher.java:442)
at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: java.io.IOException: Backing channel 'JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.18.0.3:45366' is disconnected.
at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:215)
at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:285)
at jdk.proxy2/jdk.proxy2.$Proxy188.isAlive(Unknown Source)
at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1212)
at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1204)
at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:195)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:145)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
at hudson.model.Build$BuildExecution.build(Build.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:164)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
at hudson.model.Run.execute(Run.java:1895)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
at hudson.model.ResourceController.execute(ResourceController.java:101)
at hudson.model.Executor.run(Executor.java:442)
FATAL: Unable to delete script file /tmp/jenkins6466261864785892768.sh
java.nio.channels.ClosedChannelException
at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241)
at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221)
at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825)
at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196)
at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209)
at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793)
at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172)
at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343)
at hudson.remoting.Channel.close(Channel.java:1497)
at hudson.remoting.Channel.close(Channel.java:1450)
at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943)
at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909)
at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97)
at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785)
at hudson.model.Queue._withLock(Queue.java:1401)
at hudson.model.Queue.withLock(Queue.java:1275)
at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781)
at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662)
at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374)
at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636)
at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016)
at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412)
at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039)
at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399)
at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311)
at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087)
at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205)
at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97)
at org.eclipse.jetty.server.Server.doStop(Server.java:517)
at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132)
at winstone.Launcher.shutdown(Launcher.java:442)
at winstone.ShutdownHook.run(ShutdownHook.java:28)
Caused: hudson.remoting.ChannelClosedException: Channel "hudson.remoting.Channel@d0b6132:JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.18.0.3:45366": Remote call on JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.18.0.3:45366 failed. The channel is closing down or has closed down
at hudson.remoting.Channel.call(Channel.java:996)
at hudson.FilePath.act(FilePath.java:1230)
at hudson.FilePath.act(FilePath.java:1219)
at hudson.FilePath.delete(FilePath.java:1766)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:163)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818)
at hudson.model.Build$BuildExecution.build(Build.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:164)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526)
at hudson.model.Run.execute(Run.java:1895)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)
at hudson.model.ResourceController.execute(ResourceController.java:101)
at hudson.model.Executor.run(Executor.java:442)
Build step 'Execute shell' marked build as failure
Finished: FAILURE