Started by upstream project "BIOFORMATS-test-repo" build number 207
originally caused by:
Started by upstream project "Trigger" build number 233
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4848707990596340952.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32920_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 08:57:38,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:57:38,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 08:57:38,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:57:38,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:57:38,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:57:38,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:57:38,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:57:38,083 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:57:38,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:57:38,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:57:38,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:57:38,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:57:38,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:57:38,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:57:38,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:57:38,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:57:38,279 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:57:38,279 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:57:38,279 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:57:38,280 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:57:38,280 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 08:57:38,281 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 08:57:38,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-02 08:57:38,290] [main] java.version = 17.0.2
[testng] 08:57:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:57:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:38,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-02_08-57-38.log]
[testng] 08:57:38,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-10-02 08:57:38,337] [main] testng.directory = /data
[testng] [2024-10-02 08:57:38,337] [main] testng.configDirectory = /config
[testng] [2024-10-02 08:57:38,345] [main] testng.multiplier = 1.0
[testng] [2024-10-02 08:57:38,346] [main] testng.in-memory = false
[testng] [2024-10-02 08:57:38,347] [main] testng.allow-missing = false
[testng] [2024-10-02 08:57:38,347] [main] user.language = en
[testng] [2024-10-02 08:57:38,347] [main] user.country = ${user.country}
[testng] [2024-10-02 08:57:38,347] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-02 08:57:42,303] [main] ----------------------------------------
[testng] [2024-10-02 08:57:42,304] [main] Total files: 17
[testng] [2024-10-02 08:57:42,304] [main] Scan time: 3.956 s (232 ms/file)
[testng] [2024-10-02 08:57:42,304] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-02 08:57:46,979] [pool-1-thread-1] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 08:57:46,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:57:46,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:46,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-02_08-57-46.log]
[testng] 08:57:46,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59cb7329 - End of configuration.
[testng] [2024-10-02 08:57:47,189] [pool-1-thread-12] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 08:57:47,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:57:47,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:47,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-02_08-57-47.log]
[testng] 08:57:47,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c59eb6d - End of configuration.
[testng] [2024-10-02 08:57:47,391] [pool-1-thread-11] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 08:57:47,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:57:47,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:47,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-02_08-57-47.log]
[testng] 08:57:47,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a1de17 - End of configuration.
[testng] [2024-10-02 08:57:47,609] [pool-1-thread-10] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] 08:57:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:57:47,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:47,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-02_08-57-47.log]
[testng] 08:57:47,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f28c81 - End of configuration.
[testng] [2024-10-02 08:57:47,827] [pool-1-thread-9] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 08:57:47,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:57:47,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:47,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-02_08-57-47.log]
[testng] 08:57:47,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c86090 - End of configuration.
[testng] [2024-10-02 08:57:48,019] [pool-1-thread-8] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 08:57:48,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:57:48,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:48,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-02_08-57-48.log]
[testng] 08:57:48,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6daf61 - End of configuration.
[testng] [2024-10-02 08:57:48,228] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] 08:57:48,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:57:48,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:48,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-02_08-57-48.log]
[testng] 08:57:48,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b87f364 - End of configuration.
[testng] [2024-10-02 08:57:48,444] [pool-1-thread-6] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 08:57:48,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:57:48,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:48,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-02_08-57-48.log]
[testng] 08:57:48,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20052c99 - End of configuration.
[testng] [2024-10-02 08:57:48,689] [pool-1-thread-5] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] 08:57:48,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:57:48,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:48,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-02_08-57-48.log]
[testng] 08:57:48,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@746d60ab - End of configuration.
[testng] [2024-10-02 08:57:48,903] [pool-1-thread-4] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 08:57:48,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:57:48,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:48,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-02_08-57-48.log]
[testng] 08:57:48,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd082d7 - End of configuration.
[testng] [2024-10-02 08:57:49,089] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 08:57:49,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:57:49,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:49,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-02_08-57-49.log]
[testng] 08:57:49,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c5996fb - End of configuration.
[testng] [2024-10-02 08:57:49,306] [pool-1-thread-2] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 08:57:49,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:57:49,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:57:49,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-02_08-57-49.log]
[testng] 08:57:49,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce5767c - End of configuration.
[testng] [2024-10-02 08:57:52,900] [pool-1-thread-1] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] [2024-10-02 08:57:53,124] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] [2024-10-02 08:57:53,345] [pool-1-thread-3] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] [2024-10-02 08:57:53,583] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] [2024-10-02 08:57:53,812] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 23 seconds
Finished: SUCCESS