Started by upstream project "BIOFORMATS-test-repo" build number 208
originally caused by:
 Started by upstream project "Trigger" build number 234
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5758561217254327843.sh
+ '[' li-flim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_32985_merge_ci -v /uod/idr/repos/curated/li-flim:/data -v /uod/idr-scratch/merge-ci/curated/li-flim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:43:38,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:43:38,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
   [testng] 01:43:38,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:43:38,600 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:43:38,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:43:38,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:43:38,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:43:38,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:43:38,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:43:38,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:43:38,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:43:38,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:43:38,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:43:38,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:43:38,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:43:38,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:43:38,796 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:43:38,797 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:43:38,797 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:43:38,797 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:43:38,797 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
   [testng] 01:43:38,798 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
   [testng] 01:43:38,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-03 01:43:38,807] [main] java.version = 21
   [testng] 01:43:38,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:43:38,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:38,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_01-43-38.log]
   [testng] 01:43:38,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
   [testng] [2024-10-03 01:43:38,855] [main] testng.directory = /data
   [testng] [2024-10-03 01:43:38,855] [main] testng.configDirectory = /config
   [testng] [2024-10-03 01:43:38,864] [main] testng.multiplier = 1.0
   [testng] [2024-10-03 01:43:38,865] [main] testng.in-memory = false
   [testng] [2024-10-03 01:43:38,865] [main] testng.allow-missing = false
   [testng] [2024-10-03 01:43:38,865] [main] user.language = en
   [testng] [2024-10-03 01:43:38,865] [main] user.country = ${user.country}
   [testng] [2024-10-03 01:43:38,865] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-03 01:43:40,854] [main] ----------------------------------------
   [testng] [2024-10-03 01:43:40,854] [main] Total files: 28
   [testng] [2024-10-03 01:43:40,854] [main] Scan time: 1.989 s (71 ms/file)
   [testng] [2024-10-03 01:43:40,854] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 26 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-03 01:43:46,762] [pool-1-thread-1] Initializing /data/jean-marie/Flimdata/A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] 01:43:46,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:43:46,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:46,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_01-43-46.log]
   [testng] 01:43:46,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c13e7dc - End of configuration.
   [testng] [2024-10-03 01:43:46,889] [pool-1-thread-12] Initializing /data/LambertInstruments/cp70-euresys_Lambert HS1000_1875-ST-250(msb).fli: 
   [testng] 01:43:46,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:43:46,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:46,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-03_01-43-46.log]
   [testng] 01:43:46,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b2489b - End of configuration.
   [testng] [2024-10-03 01:43:46,981] [pool-1-thread-11] Initializing /data/LambertInstruments/LambertInstruments-fli-2/15-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] 01:43:46,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:43:46,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:46,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-03_01-43-46.log]
   [testng] 01:43:46,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ab0233c - End of configuration.
   [testng] [2024-10-03 01:43:47,070] [pool-1-thread-10] Initializing /data/samples/reference-simple.fli: 
   [testng] 01:43:47,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:43:47,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-03_01-43-47.log]
   [testng] 01:43:47,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71fdd840 - End of configuration.
   [testng] [2024-10-03 01:43:47,155] [pool-1-thread-9] Initializing /data/qian/vxl-mbad-737-1um-01687.fli: 
   [testng] 01:43:47,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:43:47,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_01-43-47.log]
   [testng] 01:43:47,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f71e4e1 - End of configuration.
   [testng] [2024-10-03 01:43:47,230] [pool-1-thread-8] Initializing /data/jean-marie/Flimdata/lif_A Sample CFP-and-CFPYFP-cells-CFPbpFILTER.fli: 
   [testng] 01:43:47,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:43:47,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_01-43-47.log]
   [testng] 01:43:47,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b47310c - End of configuration.
   [testng] [2024-10-03 01:43:47,304] [pool-1-thread-7] Initializing /data/jean-marie/Flimdata/E Reference fluorescein4ns-CSU22.fli: 
   [testng] 01:43:47,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:43:47,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_01-43-47.log]
   [testng] 01:43:47,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71943b8e - End of configuration.
   [testng] [2024-10-03 01:43:47,379] [pool-1-thread-6] Initializing /data/qa-17164/ExampleFile - LiFlimReader fix ExposureTime .fli: 
   [testng] 01:43:47,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:43:47,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_01-43-47.log]
   [testng] 01:43:47,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63a1ac18 - End of configuration.
   [testng] [2024-10-03 01:43:47,457] [pool-1-thread-5] Initializing /data/samples/reference-extended.fli: 
   [testng] 01:43:47,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:43:47,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_01-43-47.log]
   [testng] 01:43:47,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190067e3 - End of configuration.
   [testng] [2024-10-03 01:43:47,528] [pool-1-thread-4] Initializing /data/samples/sample-extended.fli: 
   [testng] 01:43:47,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:43:47,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_01-43-47.log]
   [testng] 01:43:47,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1d4686 - End of configuration.
   [testng] [2024-10-03 01:43:47,604] [pool-1-thread-3] Initializing /data/jean-marie/Flimdata/A Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] 01:43:47,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:43:47,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_01-43-47.log]
   [testng] 01:43:47,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5714e352 - End of configuration.
   [testng] [2024-10-03 01:43:47,683] [pool-1-thread-2] Initializing /data/jean-marie/Flimdata/lif_D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] 01:43:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:43:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:43:47,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_01-43-47.log]
   [testng] 01:43:47,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@95e596e - End of configuration.
   [testng] [2024-10-03 01:43:49,987] [pool-1-thread-10] Initializing /data/jean-marie/Flimdata/C Reference fluorescein4ns-CFPbpFILTER.fli: 
   [testng] [2024-10-03 01:43:50,228] [pool-1-thread-5] Initializing /data/samples/sample-simple.fli: 
   [testng] [2024-10-03 01:43:50,426] [pool-1-thread-4] Initializing /data/jean-marie/IMG_4935.JPG: 
   [testng] [2024-10-03 01:43:51,349] [pool-1-thread-8] Initializing /data/rharkes/2018-11-28_10.04.10_sample_Rhodamine6G.fli: 
   [testng] [2024-10-03 01:43:51,495] [pool-1-thread-2] Initializing /data/LambertInstruments/LambertInstruments-fli-2/16-8bit_CameraSimulator_LI-Camera-Simulator.fli: 
   [testng] [2024-10-03 01:43:51,615] [pool-1-thread-6] Initializing /data/LambertInstruments/cp70-siso_Lambert HS1000_1875-ST-250(lsb).fli: 
   [testng] [2024-10-03 01:43:51,761] [pool-1-thread-11] Initializing /data/jean-marie/IMG_4936.JPG: 
   [testng] [2024-10-03 01:43:52,117] [pool-1-thread-12] Initializing /data/samples/lifetime-simple.fli: 
   [testng] [2024-10-03 01:43:52,392] [pool-1-thread-3] Initializing /data/jean-marie/Flimdata/D Sample CFPYFP-cells-CFPbpFILTER-multifreq.fli: 
   [testng] [2024-10-03 01:43:52,707] [pool-1-thread-7] Initializing /data/samples/lifetime-extended.fli: 
   [testng] [2024-10-03 01:43:52,786] [pool-1-thread-9] Initializing /data/jean-marie/Flimdata/lif_C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] [2024-10-03 01:43:52,883] [pool-1-thread-1] Initializing /data/jean-marie/Flimdata/C Sample CFP-and-CFPYFP-cells-CFPbpFILTER-slow timelapse.fli: 
   [testng] [2024-10-03 01:43:53,399] [pool-1-thread-5] Initializing /data/jean-marie/Flimdata/E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] [2024-10-03 01:43:53,736] [pool-1-thread-12] Initializing /data/jean-marie/Flimdata/lif_E Sample Typical-Dicot-Root-Zserie-CSU22.fli: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1378, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS