Started by upstream project "BIOFORMATS-test-repo" build number 208 originally caused by: Started by upstream project "Trigger" build number 234 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15072357400730219509.sh + '[' ome-tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33005_merge_ci -v /uod/idr/repos/curated/ome-tiff:/data -v /uod/idr-scratch/merge-ci/curated/ome-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:49:49,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:49:49,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:49:49,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:49,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:49,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:49:49,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:49:49,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:49:49,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:49,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:49,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:49:49,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:49:49,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:49:50,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:49:50,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:49:50,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:49:50,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:49:50,091 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:49:50,091 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:49:50,091 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:49:50,092 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:49:50,092 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:49:50,092 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:49:50,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-03 01:49:50,101] [main] java.version = 21 [testng] 01:49:50,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:49:50,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:50,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_01-49-50.log] [testng] 01:49:50,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-10-03 01:49:50,149] [main] testng.directory = /data [testng] [2024-10-03 01:49:50,150] [main] testng.configDirectory = /config [testng] [2024-10-03 01:49:50,158] [main] testng.multiplier = 1.0 [testng] [2024-10-03 01:49:50,159] [main] testng.in-memory = false [testng] [2024-10-03 01:49:50,159] [main] testng.allow-missing = false [testng] [2024-10-03 01:49:50,159] [main] user.language = en [testng] [2024-10-03 01:49:50,159] [main] user.country = ${user.country} [testng] [2024-10-03 01:49:50,159] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-03 01:53:19,689] [main] ---------------------------------------- [testng] [2024-10-03 01:53:19,689] [main] Total files: 4771 [testng] [2024-10-03 01:53:19,690] [main] Scan time: 209.53 s (43 ms/file) [testng] [2024-10-03 01:53:19,690] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 1455 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-03 02:30:22,072] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y03/image--L06--S00--U00--V00--J00--X02--Y03--T06--Z00--C00.ome.tif: [testng] 02:30:22,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:30:22,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:22,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-03_02-30-22.log] [testng] 02:30:22,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5053efc3 - End of configuration. [testng] [2024-10-03 02:30:22,827] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y04/image--L05--S00--U00--V00--J00--X00--Y04--T05--Z00--C00.ome.tif: [testng] 02:30:22,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:30:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:22,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-03_02-30-22.log] [testng] 02:30:22,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9830341 - End of configuration. [testng] [2024-10-03 02:30:23,613] [pool-1-thread-11] Initializing /data/curtis/mc4s-db.ome.tif: [testng] 02:30:23,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:30:23,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:23,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-03_02-30-23.log] [testng] 02:30:23,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a80c23e - End of configuration. [testng] [2024-10-03 02:30:24,907] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME3_WAVELENGTH1_0.ome.tif: [testng] 02:30:24,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:30:24,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:24,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-03_02-30-24.log] [testng] 02:30:24,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c7d2f97 - End of configuration. [testng] [2024-10-03 02:30:25,663] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y04/image--L08--S00--U00--V00--J00--X06--Y04--T08--Z00--C00.ome.tif: [testng] 02:30:25,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:30:25,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:25,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-03_02-30-25.log] [testng] 02:30:25,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44adff59 - End of configuration. [testng] [2024-10-03 02:30:26,419] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X05--Y00/image--L00--S00--U00--V00--J00--X05--Y00--T00--Z00--C00.ome.tif: [testng] 02:30:26,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:30:26,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:26,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-03_02-30-26.log] [testng] 02:30:26,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49cc42 - End of configuration. [testng] [2024-10-03 02:30:27,160] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y04/image--L14--S00--U00--V00--J00--X00--Y04--T14--Z00--C00.ome.tif: [testng] 02:30:27,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:30:27,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:27,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-03_02-30-27.log] [testng] 02:30:27,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4afaa5f4 - End of configuration. [testng] [2024-10-03 02:30:27,928] [pool-1-thread-6] Initializing /data/andor/iQMM_FURA_TIME111_WAVELENGTH1_0.ome.tif: [testng] 02:30:27,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:30:27,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:27,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-03_02-30-27.log] [testng] 02:30:27,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c863aa - End of configuration. [testng] [2024-10-03 02:30:28,714] [pool-1-thread-5] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y03/image--L07--S00--U00--V00--J00--X00--Y03--T07--Z00--C00.ome.tif: [testng] 02:30:28,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:30:28,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:28,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-03_02-30-28.log] [testng] 02:30:28,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1430ad9d - End of configuration. [testng] [2024-10-03 02:30:29,519] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y05/image--L11--S00--U00--V00--J00--X03--Y05--T11--Z00--C00.ome.tif: [testng] 02:30:29,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:30:29,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:29,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-03_02-30-29.log] [testng] 02:30:29,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c6d292f - End of configuration. [testng] [2024-10-03 02:30:30,271] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L07--S00--U00--V00--J00--X05--Y02--T07--Z00--C00.ome.tif: [testng] 02:30:30,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:30:30,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:30,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-03_02-30-30.log] [testng] 02:30:30,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@80319ca - End of configuration. [testng] [2024-10-03 02:30:31,051] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L14--S00--U00--V00--J00--X05--Y02--T14--Z00--C00.ome.tif: [testng] 02:30:31,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:30:31,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:31,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-03_02-30-31.log] [testng] 02:30:31,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9fb5e2 - End of configuration. [testng] [2024-10-03 02:30:40,120] [pool-1-thread-12] Initializing /data/public/2015-01/bioformats-artificial/multi-channel.ome.tif: [testng] [2024-10-03 02:30:40,907] [pool-1-thread-1] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y01/image--L10--S00--U00--V00--J00--X01--Y01--T10--Z00--C00.ome.tif: [testng] [2024-10-03 02:30:41,700] [pool-1-thread-11] Initializing /data/heinrich/3150248 Ex590.ome.tif: [testng] [2024-10-03 02:30:42,449] [pool-1-thread-8] Initializing /data/curtis/z-series.ome.tif: [testng] [2024-10-03 02:30:43,155] [pool-1-thread-2] Initializing /data/andor/iQMM_FURA_TIME42_WAVELENGTH0_0.ome.tif: [testng] [2024-10-03 02:30:43,954] [pool-1-thread-3] Initializing /data/andor/iQMM_FURA_TIME158_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 02:30:44,698] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L14--S00--U00--V00--J00--X02--Y01--T14--Z00--C00.ome.tif: [testng] [2024-10-03 02:30:45,842] [pool-1-thread-5] Initializing /data/andor/iQMM_FURA_TIME87_WAVELENGTH0_0.ome.tif: [testng] [2024-10-03 02:30:46,688] [pool-1-thread-9] Initializing /data/andor/iQMM_FURA_TIME159_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 02:30:47,425] [pool-1-thread-4] Initializing /data/andor/iQMM_FURA_TIME93_WAVELENGTH0_0.ome.tif: [testng] [2024-10-03 02:30:48,257] [pool-1-thread-10] Initializing /data/curtis/single-channel.ome.tif: [testng] [2024-10-03 02:30:48,966] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y06/image--L00--S00--U00--V00--J00--X05--Y06--T00--Z00--C00.ome.tif: [testng] [2024-10-03 02:30:54,923] [pool-1-thread-12] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y05/image--L00--S00--U00--V00--J00--X02--Y05--T00--Z00--C00.ome.tif: [testng] [2024-10-03 02:30:55,743] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L11--S00--U00--V00--J00--X05--Y02--T11--Z00--C00.ome.tif: [testng] [2024-10-03 02:30:56,525] [pool-1-thread-1] Initializing /data/glen/OMETiff Slidebook/Capture 2 - Position 1_XYT0.tif: [testng] [2024-10-03 02:31:01,369] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y05/image--L02--S00--U00--V00--J00--X00--Y05--T02--Z00--C00.ome.tif: [testng] [2024-10-03 02:31:02,959] [pool-1-thread-7] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y05/image--L12--S00--U00--V00--J00--X05--Y05--T12--Z00--C00.ome.tif: [testng] [2024-10-03 02:31:04,901] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y02/image--L06--S00--U00--V00--J00--X05--Y02--T06--Z00--C00.ome.tif: [testng] [2024-10-03 02:31:05,992] [pool-1-thread-11] Initializing /data/oliver/LA_ProtocolCombination_12.10.2009_21_40_58_Marker_1__3 2.tif: [testng] [2024-10-03 02:31:11,479] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y03/image--L09--S00--U00--V00--J00--X02--Y03--T09--Z00--C00.ome.tif: [testng] [2024-10-03 02:31:12,330] [pool-1-thread-3] Initializing /data/curtis/multispectral/spc.ome.tif: [testng] [2024-10-03 02:31:13,128] [pool-1-thread-9] Initializing /data/andor/iQMM_FURA_TIME176_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 02:31:13,897] [pool-1-thread-2] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y03/image--L01--S00--U00--V00--J00--X04--Y03--T01--Z00--C00.ome.tif: [testng] [2024-10-03 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Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L04--S00--U00--V00--J00--X02--Y01--T04--Z00--C00.ome.tif: [testng] [2024-10-03 03:23:27,182] [pool-1-thread-9] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X03--Y02/image--L06--S00--U00--V00--J00--X03--Y02--T06--Z00--C00.ome.tif: [testng] [2024-10-03 03:23:30,836] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME121_WAVELENGTH0_0.ome.tif: [testng] [2024-10-03 03:23:33,126] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X03--Y00/image--L00--S00--U00--V00--J00--X03--Y00--T00--Z00--C00.ome.tif: [testng] [2024-10-03 03:23:34,151] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y00/image--L01--S00--U00--V00--J00--X00--Y00--T01--Z00--C00.ome.tif: [testng] [2024-10-03 03:23:35,841] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y01/image--L06--S00--U00--V00--J00--X04--Y01--T06--Z00--C00.ome.tif: [testng] [2024-10-03 03:23:39,585] [pool-1-thread-9] Initializing /data/idr0052/cell0007_R0001.companion.ome: [testng] [2024-10-03 03:25:25,545] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X01--Y02/image--L12--S00--U00--V00--J00--X01--Y02--T12--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:27,738] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X04--Y04/image--L13--S00--U00--V00--J00--X04--Y04--T13--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:31,149] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X03--Y01/image--L00--S00--U00--V00--J00--X03--Y01--T00--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:32,225] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L01--S00--U00--V00--J00--X00--Y01--T01--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:33,897] [pool-1-thread-3] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X06--Y01/image--L10--S00--U00--V00--J00--X06--Y01--T10--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:36,711] [pool-1-thread-4] Initializing /data/andor/iQMM_FURA_TIME20_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 03:25:38,321] [pool-1-thread-10] Initializing /data/andor/iQMM_FURA_TIME64_WAVELENGTH0_0.ome.tif: [testng] [2024-10-03 03:25:41,865] [pool-1-thread-8] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X05--Y05/image--L11--S00--U00--V00--J00--X05--Y05--T11--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:42,866] [pool-1-thread-6] Initializing /data/chris/Video1_SGMCA.ome.tiff: [testng] [2024-10-03 03:25:46,964] [pool-1-thread-3] Initializing /data/andor/iQMM_FURA_TIME37_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 03:25:51,341] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y01/image--L10--S00--U00--V00--J00--X00--Y01--T10--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:53,289] [pool-1-thread-6] Initializing /data/ruben/experiment--2009_10_27_15_43_34/slide--S00/chamber--U00--V00/field--X02--Y01/image--L00--S00--U00--V00--J00--X02--Y01--T00--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:54,270] [pool-1-thread-10] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X02--Y01/image--L09--S00--U00--V00--J00--X02--Y01--T09--Z00--C00.ome.tif: [testng] [2024-10-03 03:25:55,196] [pool-1-thread-8] Initializing /data/andor/iQMM_FURA_TIME144_WAVELENGTH1_0.ome.tif: [testng] [2024-10-03 03:26:00,649] [pool-1-thread-3] Initializing /data/public/2016-06/modulo/SPIM-ModuloAlongZ.ome.tiff: [testng] [2024-10-03 03:26:01,676] [pool-1-thread-4] Initializing /data/ruben/experiment--2009_10_27_15_59_00/slide--S00/chamber--U00--V00/field--X00--Y06/image--L06--S00--U00--V00--J00--X00--Y06--T06--Z00--C00.ome.tif: [testng] 04:35:28,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:35:28,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:35:28,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-03_04-35-28.log] [testng] 04:35:28,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3c492 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 77115, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 165 minutes 41 seconds Finished: SUCCESS