Started by upstream project "BIOFORMATS-test-repo" build number 209
originally caused by:
Started by upstream project "Trigger" build number 235
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12042047078189904946.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33225_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:10:19,301 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:10:19,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 03:10:19,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:10:19,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:10:19,304 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:10:19,304 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:10:19,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:10:19,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:10:19,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:10:19,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:10:19,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:10:19,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:10:19,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:10:19,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:10:19,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:10:19,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:10:19,614 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:10:19,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:10:19,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:10:19,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:10:19,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 03:10:19,615 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 03:10:19,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 311 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-04 03:10:19,627] [main] java.version = 1.8.0_342
[testng] 03:10:19,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:10:19,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:19,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_03-10-19.log]
[testng] 03:10:19,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-10-04 03:10:19,684] [main] testng.directory = /data
[testng] [2024-10-04 03:10:19,684] [main] testng.configDirectory = /config
[testng] [2024-10-04 03:10:19,698] [main] testng.multiplier = 1.0
[testng] [2024-10-04 03:10:19,698] [main] testng.in-memory = false
[testng] [2024-10-04 03:10:19,698] [main] testng.allow-missing = false
[testng] [2024-10-04 03:10:19,698] [main] user.language = en
[testng] [2024-10-04 03:10:19,698] [main] user.country = ${user.country}
[testng] [2024-10-04 03:10:19,698] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-04 03:10:33,182] [main] ----------------------------------------
[testng] [2024-10-04 03:10:33,182] [main] Total files: 68
[testng] [2024-10-04 03:10:33,183] [main] Scan time: 13.484 s (198 ms/file)
[testng] [2024-10-04 03:10:33,183] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 60 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-04 03:10:55,332] [pool-1-thread-1] Initializing /data/generated/10-31_E_t0012.ims:
[testng] 03:10:55,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:10:55,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_03-10-55.log]
[testng] 03:10:55,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ce5d55 - End of configuration.
[testng] [2024-10-04 03:10:55,383] [pool-1-thread-12] Initializing /data/qa-4898/o383_1_457_CS_r1.ims:
[testng] 03:10:55,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:10:55,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_03-10-55.log]
[testng] 03:10:55,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1133b6ec - End of configuration.
[testng] [2024-10-04 03:10:55,489] [pool-1-thread-11] Initializing /data/jason/imaris_5_5_demoimages/retina.ims:
[testng] 03:10:55,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:10:55,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_03-10-55.log]
[testng] 03:10:55,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c5f340 - End of configuration.
[testng] [2024-10-04 03:10:55,599] [pool-1-thread-10] Initializing /data/public/davemason/Convallaria_3C_10T_confocal.ims:
[testng] 03:10:55,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:10:55,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_03-10-55.log]
[testng] 03:10:55,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@759a4e32 - End of configuration.
[testng] [2024-10-04 03:10:55,706] [pool-1-thread-9] Initializing /data/kay/Imaris503_test_Kay.ims:
[testng] 03:10:55,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:10:55,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_03-10-55.log]
[testng] 03:10:55,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30f00779 - End of configuration.
[testng] [2024-10-04 03:10:55,841] [pool-1-thread-8] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims:
[testng] 03:10:55,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:10:55,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_03-10-55.log]
[testng] 03:10:55,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7650965d - End of configuration.
[testng] [2024-10-04 03:10:55,944] [pool-1-thread-7] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF_IMS3.ims:
[testng] 03:10:55,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:10:55,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:55,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_03-10-55.log]
[testng] 03:10:55,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48f5670b - End of configuration.
[testng] [2024-10-04 03:10:56,049] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0005.ims:
[testng] 03:10:56,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:10:56,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:56,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_03-10-56.log]
[testng] 03:10:56,051 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4adee77c - End of configuration.
[testng] [2024-10-04 03:10:56,111] [pool-1-thread-5] Initializing /data/generated/MF-2CH-Z-T.ims:
[testng] 03:10:56,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:10:56,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:56,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_03-10-56.log]
[testng] 03:10:56,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bad3bac - End of configuration.
[testng] [2024-10-04 03:10:56,248] [pool-1-thread-4] Initializing /data/jason/imaris_5_5_demoimages/PtK2Cell.ims:
[testng] 03:10:56,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:10:56,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:56,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_03-10-56.log]
[testng] 03:10:56,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f505572 - End of configuration.
[testng] [2024-10-04 03:10:56,400] [pool-1-thread-3] Initializing /data/qa-17515/Organoid=1.ims:
[testng] 03:10:56,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:10:56,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:56,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_03-10-56.log]
[testng] 03:10:56,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12a84cde - End of configuration.
[testng] [2024-10-04 03:10:56,705] [pool-1-thread-2] Initializing /data/generated/mri-stack-original.ims:
[testng] 03:10:56,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:10:56,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:10:56,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_03-10-56.log]
[testng] 03:10:56,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a96741 - End of configuration.
BUILD SUCCESSFUL
Total time: 1 minute 58 seconds
Finished: SUCCESS