Started by upstream project "BIOFORMATS-test-repo" build number 209 originally caused by: Started by upstream project "Trigger" build number 235 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12437900720710889724.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33266_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:15:44,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:15:44,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 04:15:44,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:15:44,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:15:44,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:15:44,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:15:44,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:15:44,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:15:44,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:15:44,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:15:44,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:15:44,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:15:45,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:15:45,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:15:45,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:15:45,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:15:45,140 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:15:45,141 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:15:45,141 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:15:45,141 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:15:45,141 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 04:15:45,142 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 04:15:45,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-04 04:15:45,152] [main] java.version = 1.8.0_342 [testng] 04:15:45,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:15:45,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:15:45,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_04-15-45.log] [testng] 04:15:45,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-04 04:15:45,202] [main] testng.directory = /data [testng] [2024-10-04 04:15:45,202] [main] testng.configDirectory = /config [testng] [2024-10-04 04:15:45,214] [main] testng.multiplier = 1.0 [testng] [2024-10-04 04:15:45,214] [main] testng.in-memory = false [testng] [2024-10-04 04:15:45,214] [main] testng.allow-missing = false [testng] [2024-10-04 04:15:45,215] [main] user.language = en [testng] [2024-10-04 04:15:45,215] [main] user.country = ${user.country} [testng] [2024-10-04 04:15:45,215] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-04 04:15:48,043] [main] ---------------------------------------- [testng] [2024-10-04 04:15:48,043] [main] Total files: 22 [testng] [2024-10-04 04:15:48,043] [main] Scan time: 2.828 s (128 ms/file) [testng] [2024-10-04 04:15:48,043] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-04 04:16:00,036] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] 04:16:00,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:16:00,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:00,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_04-16-00.log] [testng] 04:16:00,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef792fe - End of configuration. [testng] [2024-10-04 04:16:00,286] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 04:16:00,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:16:00,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:00,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_04-16-00.log] [testng] 04:16:00,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abc1f4f - End of configuration. [testng] [2024-10-04 04:16:00,489] [pool-1-thread-11] Initializing /data/converted/clown.seq: [testng] 04:16:00,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:16:00,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:00,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_04-16-00.log] [testng] 04:16:00,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da663d5 - End of configuration. [testng] [2024-10-04 04:16:00,722] [pool-1-thread-10] Initializing /data/converted/dub01.pic: [testng] 04:16:00,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:16:00,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:00,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_04-16-00.log] [testng] 04:16:00,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57eb3371 - End of configuration. [testng] [2024-10-04 04:16:00,940] [pool-1-thread-9] Initializing /data/converted/clown.tif: [testng] 04:16:00,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:16:00,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:00,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_04-16-00.log] [testng] 04:16:00,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28bfc169 - End of configuration. [testng] [2024-10-04 04:16:01,198] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] 04:16:01,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:16:01,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:01,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_04-16-01.log] [testng] 04:16:01,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bec3cfd - End of configuration. [testng] [2024-10-04 04:16:01,787] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:16:01,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:16:01,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:01,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_04-16-01.log] [testng] 04:16:01,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dddacb - End of configuration. [testng] [2024-10-04 04:16:02,083] [pool-1-thread-6] Initializing /data/samples/FLDUAL.TIF: [testng] 04:16:02,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:16:02,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:02,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_04-16-02.log] [testng] 04:16:02,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71d3f453 - End of configuration. [testng] [2024-10-04 04:16:02,682] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw: [testng] 04:16:02,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:16:02,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:02,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_04-16-02.log] [testng] 04:16:02,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606d2c0d - End of configuration. [testng] [2024-10-04 04:16:02,905] [pool-1-thread-4] Initializing /data/converted/mitosis-test.ipw: [testng] 04:16:02,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:16:02,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:02,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_04-16-02.log] [testng] 04:16:02,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a379eb9 - End of configuration. [testng] [2024-10-04 04:16:03,106] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: [testng] 04:16:03,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:16:03,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:03,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_04-16-03.log] [testng] 04:16:03,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60dce90e - End of configuration. [testng] [2024-10-04 04:16:03,345] [pool-1-thread-2] Initializing /data/converted/clown.ipw: [testng] 04:16:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:16:03,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:03,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_04-16-03.log] [testng] 04:16:03,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a25055 - End of configuration. [testng] [2024-10-04 04:16:06,741] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-04 04:16:07,403] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq: [testng] [2024-10-04 04:16:07,775] [pool-1-thread-11] Initializing /data/converted/dub01.seq: [testng] [2024-10-04 04:16:08,096] [pool-1-thread-4] Initializing /data/converted/dub01.ipw: [testng] [2024-10-04 04:16:08,376] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] [2024-10-04 04:16:09,010] [pool-1-thread-10] Initializing /data/converted/mitosis-test.tif: [testng] [2024-10-04 04:16:09,620] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ: [testng] [2024-10-04 04:16:09,844] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] [2024-10-04 04:16:10,073] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 49 seconds Finished: SUCCESS