Started by upstream project "BIOFORMATS-test-repo" build number 210
originally caused by:
Started by upstream project "Trigger" build number 236
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4344823015854071371.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33283_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:27:50,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:50,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:27:50,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:50,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:50,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:50,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:50,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:50,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:50,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:50,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:50,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:50,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:50,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:50,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:50,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:50,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:50,881 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:50,881 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:50,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:50,882 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:50,882 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:27:50,883 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:27:50,883 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-05 01:27:50,891] [main] java.version = 11.0.16
[testng] 01:27:50,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:50,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:50,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_01-27-50.log]
[testng] 01:27:50,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-10-05 01:27:50,940] [main] testng.directory = /data
[testng] [2024-10-05 01:27:50,940] [main] testng.configDirectory = /config
[testng] [2024-10-05 01:27:50,950] [main] testng.multiplier = 1.0
[testng] [2024-10-05 01:27:50,951] [main] testng.in-memory = false
[testng] [2024-10-05 01:27:50,951] [main] testng.allow-missing = false
[testng] [2024-10-05 01:27:50,951] [main] user.language = en
[testng] [2024-10-05 01:27:50,951] [main] user.country = ${user.country}
[testng] [2024-10-05 01:27:50,951] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-05 01:28:10,123] [main] ----------------------------------------
[testng] [2024-10-05 01:28:10,123] [main] Total files: 315
[testng] [2024-10-05 01:28:10,123] [main] Scan time: 19.171 s (60 ms/file)
[testng] [2024-10-05 01:28:10,124] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-05 01:37:03,864] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] 01:37:03,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:37:03,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:03,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_01-37-03.log]
[testng] 01:37:03,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2488fc2f - End of configuration.
[testng] [2024-10-05 01:37:04,478] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] 01:37:04,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:37:04,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:04,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_01-37-04.log]
[testng] 01:37:04,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16ebee6d - End of configuration.
[testng] [2024-10-05 01:37:04,766] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] 01:37:04,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:37:04,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:04,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_01-37-04.log]
[testng] 01:37:04,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693ff1d5 - End of configuration.
[testng] [2024-10-05 01:37:05,255] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] 01:37:05,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:37:05,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:05,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_01-37-05.log]
[testng] 01:37:05,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a020a8 - End of configuration.
[testng] [2024-10-05 01:37:05,599] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] 01:37:05,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:37:05,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:05,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_01-37-05.log]
[testng] 01:37:05,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d6e9a6 - End of configuration.
[testng] [2024-10-05 01:37:05,999] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] 01:37:05,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:37:05,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:06,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_01-37-06.log]
[testng] 01:37:06,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6428f935 - End of configuration.
[testng] [2024-10-05 01:37:06,379] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] 01:37:06,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:37:06,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:06,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_01-37-06.log]
[testng] 01:37:06,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77bbb8cb - End of configuration.
[testng] [2024-10-05 01:37:06,747] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir:
[testng] 01:37:06,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:37:06,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:06,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_01-37-06.log]
[testng] 01:37:06,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454206ff - End of configuration.
[testng] [2024-10-05 01:37:07,477] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] 01:37:07,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:37:07,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:07,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_01-37-07.log]
[testng] 01:37:07,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68401e66 - End of configuration.
[testng] [2024-10-05 01:37:07,762] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] 01:37:07,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:37:07,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:07,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_01-37-07.log]
[testng] 01:37:07,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@899b6e9 - End of configuration.
[testng] [2024-10-05 01:37:08,318] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] 01:37:08,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:37:08,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:08,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_01-37-08.log]
[testng] 01:37:08,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca744b1 - End of configuration.
[testng] [2024-10-05 01:37:08,668] [pool-1-thread-2] Initializing /data/qa-17270/stack1.oir:
[testng] 01:37:08,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:37:08,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:08,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_01-37-08.log]
[testng] 01:37:08,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf2b86d - End of configuration.
[testng] [2024-10-05 01:37:15,121] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-05 01:37:15,672] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-05 01:37:44,954] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-05 01:37:45,169] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-05 01:37:45,654] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-05 01:37:45,669] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-05 01:37:46,044] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-05 01:37:47,294] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-05 01:37:49,617] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-05 01:37:50,066] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-05 01:37:52,927] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-05 01:37:54,257] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-05 01:37:54,889] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-05 01:37:58,528] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-05 01:37:59,192] [pool-1-thread-2] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-05 01:38:00,050] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-05 01:38:01,122] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-05 01:38:03,918] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-05 01:38:05,602] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-05 01:38:07,558] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-05 01:38:08,030] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-05 01:38:09,823] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-05 01:38:11,554] [pool-1-thread-2] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-05 01:38:12,156] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-05 01:38:13,182] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-05 01:38:13,754] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-05 01:38:15,027] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-05 01:38:17,122] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-05 01:38:18,403] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-05 01:38:18,815] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-05 01:38:19,374] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-05 01:38:19,972] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-05 01:38:20,407] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-05 01:38:22,371] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-05 01:38:22,752] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-10-05 01:38:24,565] [pool-1-thread-2] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-05 01:38:26,472] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-05 01:38:26,876] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-05 01:38:27,241] [pool-1-thread-7] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-05 01:38:27,479] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-10-05 01:38:27,794] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-05 01:38:28,181] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-05 01:38:32,603] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-05 01:38:33,164] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-05 01:38:56,454] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-05 01:38:57,230] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-05 01:38:57,592] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-05 01:38:58,228] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-05 01:39:01,354] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-05 01:39:03,366] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-05 01:39:07,887] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-05 01:39:08,764] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-05 01:39:09,734] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-05 01:39:11,923] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-05 01:39:20,873] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-05 01:39:21,226] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-05 01:39:23,149] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-05 01:39:23,855] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-05 01:39:24,473] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-05 01:39:26,338] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-05 01:39:26,974] [pool-1-thread-6] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-05 01:39:28,659] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-05 01:39:29,309] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-05 01:39:29,764] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-05 01:39:31,470] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-05 01:39:31,740] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-05 01:39:32,512] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-05 01:39:32,918] [pool-1-thread-7] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-05 01:39:35,885] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-10-05 01:39:36,427] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-05 01:39:37,565] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-05 01:39:39,836] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-05 01:39:40,142] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-05 01:39:40,886] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-05 01:39:43,625] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-05 01:39:44,145] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-10-05 01:39:44,556] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-05 01:39:47,370] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-05 01:39:48,096] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-05 01:39:51,770] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-05 01:39:52,077] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-05 01:39:52,332] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-05 01:39:52,690] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-05 01:39:55,397] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-05 01:39:56,492] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-05 01:39:57,186] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-05 01:39:57,494] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-05 01:39:58,033] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-05 01:40:00,146] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-05 01:40:01,939] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-05 01:40:02,629] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-05 01:40:03,468] [pool-1-thread-11] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-05 01:40:08,831] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-05 01:40:09,073] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-05 01:40:10,993] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-05 01:40:11,381] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-05 01:40:13,103] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-05 01:40:13,602] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-05 01:40:13,869] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-05 01:40:16,580] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-05 01:40:17,673] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-05 01:40:18,277] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-05 01:40:18,883] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-05 01:40:21,403] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-05 01:40:21,759] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-05 01:40:24,865] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-05 01:40:26,074] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-05 01:40:26,594] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-05 01:40:28,515] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-05 01:40:29,043] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-05 01:40:30,214] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-05 01:40:30,792] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-05 01:40:31,959] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-05 01:40:32,701] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-10-05 01:40:33,184] [pool-1-thread-4] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-05 01:40:33,630] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-05 01:40:35,933] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-05 01:40:37,183] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-05 01:40:37,588] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-05 01:40:37,928] [pool-1-thread-6] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-05 01:40:38,290] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-05 01:40:41,457] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-05 01:40:42,326] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-05 01:40:42,833] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-05 01:40:43,580] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-05 01:40:44,357] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-05 01:40:44,673] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-05 01:40:47,855] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-05 01:40:48,239] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-05 01:40:48,881] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-05 01:40:49,231] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-05 01:40:49,683] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-05 01:40:51,614] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-05 01:40:52,755] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-05 01:40:52,979] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-05 01:41:11,098] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-05 01:41:11,307] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-05 01:41:11,581] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-05 01:41:13,580] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-05 01:41:14,515] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-05 01:41:15,079] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-05 01:41:15,766] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-05 01:41:15,970] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-05 01:41:22,663] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-05 01:41:24,574] [pool-1-thread-8] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-05 01:41:25,034] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-05 01:41:25,845] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-05 01:41:28,391] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-05 01:41:30,041] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-05 01:41:30,783] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-05 01:41:33,242] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-05 01:41:35,348] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-05 01:41:37,235] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-05 01:41:37,535] [pool-1-thread-4] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-05 01:41:38,025] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-05 01:41:40,475] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-05 01:41:40,916] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-05 01:41:43,325] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-05 01:41:44,238] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-05 01:41:46,548] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-05 01:41:47,229] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-05 01:41:49,801] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-05 01:41:50,141] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-05 01:41:54,473] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-05 01:41:55,551] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-05 01:41:58,631] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-10-05 01:41:59,510] [pool-1-thread-6] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-05 01:42:52,827] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-05 01:42:53,673] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-05 01:42:55,102] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-05 01:42:56,148] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-05 01:42:56,518] [pool-1-thread-9] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-05 01:42:59,230] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-05 01:43:00,376] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-05 01:43:01,233] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-05 01:43:03,535] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-05 01:43:03,944] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-05 01:43:07,416] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-05 01:43:08,635] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-05 01:43:09,775] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 52 minutes 43 seconds
Finished: SUCCESS