Started by upstream project "BIOFORMATS-test-repo" build number 210
originally caused by:
Started by upstream project "Trigger" build number 236
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2427429261143268354.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33361_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:41:17,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:41:17,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:41:17,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:41:17,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:41:17,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:41:17,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:41:17,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:41:17,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:41:17,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:41:17,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:41:17,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:41:17,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:41:17,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:41:17,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:41:17,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:41:17,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:41:17,350 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:41:17,350 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:41:17,350 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:41:17,350 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:41:17,350 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:41:17,352 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:41:17,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-05 02:41:17,360] [main] java.version = 11.0.16
[testng] 02:41:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:41:17,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:17,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_02-41-17.log]
[testng] 02:41:17,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-10-05 02:41:17,408] [main] testng.directory = /data
[testng] [2024-10-05 02:41:17,409] [main] testng.configDirectory = /config
[testng] [2024-10-05 02:41:17,418] [main] testng.multiplier = 1.0
[testng] [2024-10-05 02:41:17,419] [main] testng.in-memory = false
[testng] [2024-10-05 02:41:17,419] [main] testng.allow-missing = false
[testng] [2024-10-05 02:41:17,419] [main] user.language = en
[testng] [2024-10-05 02:41:17,420] [main] user.country = ${user.country}
[testng] [2024-10-05 02:41:17,420] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-05 02:43:19,229] [main] ----------------------------------------
[testng] [2024-10-05 02:43:19,230] [main] Total files: 268
[testng] [2024-10-05 02:43:19,230] [main] Scan time: 121.809 s (454 ms/file)
[testng] [2024-10-05 02:43:19,230] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-05 02:46:32,471] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] 02:46:32,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:46:32,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:32,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_02-46-32.log]
[testng] 02:46:32,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c1bbab - End of configuration.
[testng] [2024-10-05 02:46:32,785] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] 02:46:32,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:46:32,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:32,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_02-46-32.log]
[testng] 02:46:32,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c15e3b - End of configuration.
[testng] [2024-10-05 02:46:33,349] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] 02:46:33,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:46:33,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:33,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_02-46-33.log]
[testng] 02:46:33,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c517b6 - End of configuration.
[testng] [2024-10-05 02:46:33,557] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] 02:46:33,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:46:33,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:33,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_02-46-33.log]
[testng] 02:46:33,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a9b6d6 - End of configuration.
[testng] [2024-10-05 02:46:33,794] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] 02:46:33,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:46:33,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:33,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_02-46-33.log]
[testng] 02:46:33,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20100db - End of configuration.
[testng] [2024-10-05 02:46:33,990] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] 02:46:33,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:46:33,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:33,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_02-46-33.log]
[testng] 02:46:33,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2898d8ff - End of configuration.
[testng] [2024-10-05 02:46:34,628] [pool-1-thread-7] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] 02:46:34,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:46:34,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:34,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_02-46-34.log]
[testng] 02:46:34,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ebd0634 - End of configuration.
[testng] [2024-10-05 02:46:35,167] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] 02:46:35,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:46:35,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:35,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_02-46-35.log]
[testng] 02:46:35,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad6f042 - End of configuration.
[testng] [2024-10-05 02:46:35,451] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] 02:46:35,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:46:35,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:35,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_02-46-35.log]
[testng] 02:46:35,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d43ac7f - End of configuration.
[testng] [2024-10-05 02:46:35,627] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] 02:46:35,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:46:35,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:35,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_02-46-35.log]
[testng] 02:46:35,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76e036a6 - End of configuration.
[testng] [2024-10-05 02:46:35,684] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] 02:46:35,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:46:35,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:35,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_02-46-35.log]
[testng] 02:46:35,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5859fb4b - End of configuration.
[testng] [2024-10-05 02:46:36,350] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] 02:46:36,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:46:36,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:36,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_02-46-36.log]
[testng] 02:46:36,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5b95f9 - End of configuration.
[testng] [2024-10-05 02:46:39,141] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-10-05 02:46:40,271] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-10-05 02:46:40,446] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-10-05 02:46:40,606] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-10-05 02:46:41,238] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-10-05 02:46:41,945] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-10-05 02:46:42,958] [pool-1-thread-8] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-10-05 02:46:43,363] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-10-05 02:46:43,662] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-10-05 02:46:44,189] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-10-05 02:46:44,686] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-10-05 02:46:44,880] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-10-05 02:46:45,091] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-10-05 02:46:45,380] [pool-1-thread-4] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-10-05 02:46:46,092] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-10-05 02:46:46,461] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-10-05 02:46:46,807] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-10-05 02:46:47,231] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-10-05 02:46:47,894] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-10-05 02:46:48,358] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-10-05 02:46:48,673] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-10-05 02:46:48,909] [pool-1-thread-9] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-10-05 02:46:49,773] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-10-05 02:46:50,167] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-10-05 02:46:50,505] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-10-05 02:46:50,659] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] [2024-10-05 02:46:51,048] [pool-1-thread-6] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-10-05 02:46:51,855] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-10-05 02:46:52,950] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-10-05 02:46:53,228] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-10-05 02:46:53,493] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-10-05 02:46:53,908] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-10-05 02:46:54,232] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-10-05 02:46:54,754] [pool-1-thread-7] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-10-05 02:46:55,882] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-10-05 02:46:57,440] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-10-05 02:46:57,803] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-10-05 02:46:57,990] [pool-1-thread-5] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-10-05 02:46:58,800] [pool-1-thread-11] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-10-05 02:46:59,647] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-10-05 02:46:59,997] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-10-05 02:47:00,718] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-10-05 02:47:01,512] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-10-05 02:47:02,172] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-10-05 02:47:03,143] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-10-05 02:47:03,421] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-10-05 02:47:03,715] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-10-05 02:47:04,594] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-10-05 02:47:05,822] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-10-05 02:47:06,122] [pool-1-thread-7] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-10-05 02:47:06,323] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-10-05 02:47:06,598] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-10-05 02:47:07,280] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-10-05 02:47:08,177] [pool-1-thread-6] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-10-05 02:47:09,117] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-10-05 02:47:10,012] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-10-05 02:47:10,634] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-10-05 02:47:11,314] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-10-05 02:47:12,458] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-10-05 02:47:12,709] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-10-05 02:47:12,902] [pool-1-thread-10] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-10-05 02:47:13,743] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-10-05 02:47:14,147] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-10-05 02:47:14,545] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-10-05 02:47:15,273] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-10-05 02:47:15,731] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-10-05 02:47:17,232] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-10-05 02:47:18,081] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-10-05 02:47:18,886] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-10-05 02:47:19,804] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-10-05 02:47:22,401] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-10-05 02:47:23,271] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-10-05 02:47:24,456] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-10-05 02:47:27,983] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-10-05 02:47:29,257] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-10-05 02:47:29,973] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-10-05 02:47:30,720] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-10-05 02:47:31,025] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-10-05 02:47:31,222] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-10-05 02:47:31,853] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-10-05 02:47:31,972] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-10-05 02:47:32,668] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-10-05 02:47:33,396] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-10-05 02:47:33,647] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-10-05 02:47:34,902] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-10-05 02:47:35,180] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-10-05 02:47:35,342] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-10-05 02:47:36,087] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-10-05 02:47:36,717] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-10-05 02:47:37,313] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-10-05 02:47:38,648] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-10-05 02:47:38,891] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-10-05 02:47:39,131] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-10-05 02:47:39,421] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-10-05 02:47:40,051] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-10-05 02:47:40,342] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-10-05 02:47:40,594] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-10-05 02:47:40,924] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-10-05 02:47:41,055] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-10-05 02:47:41,575] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] [2024-10-05 02:47:41,926] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-10-05 02:47:42,215] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-10-05 02:47:42,989] [pool-1-thread-6] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-10-05 02:47:43,249] [pool-1-thread-7] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-10-05 02:47:43,419] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-10-05 02:47:44,256] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s:
[testng] [2024-10-05 02:47:48,136] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-10-05 02:47:49,441] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-10-05 02:47:49,690] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-10-05 02:47:49,928] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-10-05 02:47:50,333] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-10-05 02:47:50,740] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-10-05 02:47:50,985] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-10-05 02:47:51,798] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-10-05 02:47:52,007] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-10-05 02:47:52,957] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-10-05 02:47:53,229] [pool-1-thread-3] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-10-05 02:47:54,056] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-10-05 02:47:54,430] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] [2024-10-05 02:47:54,837] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-10-05 02:47:55,611] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-10-05 02:47:55,757] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-10-05 02:47:56,323] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-10-05 02:47:56,949] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-10-05 02:47:57,788] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-10-05 02:47:58,082] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-10-05 02:47:59,097] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-10-05 02:47:59,409] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-10-05 02:48:00,204] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-10-05 02:48:00,368] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-10-05 02:48:01,053] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-10-05 02:48:01,628] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-10-05 02:48:02,389] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-10-05 02:48:03,090] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-10-05 02:48:03,405] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-10-05 02:48:03,483] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-10-05 02:48:03,689] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-10-05 02:48:04,019] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-10-05 02:48:04,458] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-10-05 02:48:04,711] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-10-05 02:48:04,954] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] [2024-10-05 02:48:05,210] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-10-05 02:48:05,496] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-10-05 02:48:06,181] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-10-05 02:48:07,130] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-10-05 02:48:08,060] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-10-05 02:48:08,753] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-10-05 02:48:09,099] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 0 seconds
Finished: SUCCESS