Started by upstream project "BIOFORMATS-test-repo" build number 210
originally caused by:
 Started by upstream project "Trigger" build number 236
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9102763409141299392.sh
+ '[' bruker = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33407_merge_ci -v /uod/idr/repos/curated/bruker:/data -v /uod/idr-scratch/merge-ci/curated/bruker:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 03:44:04,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:44:04,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 03:44:04,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:44:04,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:44:04,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:44:04,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:44:04,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:44:04,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:44:04,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:44:04,153 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:44:04,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:44:04,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:44:04,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:44:04,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:44:04,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:44:04,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:44:04,346 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:44:04,347 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:44:04,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:44:04,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:44:04,347 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 03:44:04,348 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 03:44:04,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-05 03:44:04,357] [main] java.version = 11.0.16
   [testng] 03:44:04,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:44:04,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:44:04,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_03-44-04.log]
   [testng] 03:44:04,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-10-05 03:44:04,405] [main] testng.directory = /data
   [testng] [2024-10-05 03:44:04,405] [main] testng.configDirectory = /config
   [testng] [2024-10-05 03:44:04,415] [main] testng.multiplier = 1.0
   [testng] [2024-10-05 03:44:04,416] [main] testng.in-memory = false
   [testng] [2024-10-05 03:44:04,417] [main] testng.allow-missing = false
   [testng] [2024-10-05 03:44:04,417] [main] user.language = en
   [testng] [2024-10-05 03:44:04,417] [main] user.country = ${user.country}
   [testng] [2024-10-05 03:44:04,417] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-05 03:58:37,296] [main] ----------------------------------------
   [testng] [2024-10-05 03:58:37,297] [main] Total files: 826
   [testng] [2024-10-05 03:58:37,297] [main] Scan time: 872.879 s (1056 ms/file)
   [testng] [2024-10-05 03:58:37,297] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-05 03:59:16,944] [pool-1-thread-1] Initializing /data/wis/tiffs/RA_060110_051_scan1_slice1.tif: 
   [testng] 03:59:16,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:59:16,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:16,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_03-59-16.log]
   [testng] 03:59:16,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424fd6d9 - End of configuration.
   [testng] [2024-10-05 03:59:17,949] [pool-1-thread-12] Initializing /data/wis/tiffs/RA_060110_051_scan1_slice3.tif: 
   [testng] 03:59:17,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:59:17,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:17,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_03-59-17.log]
   [testng] 03:59:17,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ad065c2 - End of configuration.
   [testng] [2024-10-05 03:59:18,940] [pool-1-thread-11] Initializing /data/wis/tiffs/RAf_100110_091_Scan6_Slice5_echo1.tif: 
   [testng] 03:59:18,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:59:18,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:18,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_03-59-18.log]
   [testng] 03:59:18,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6da861eb - End of configuration.
   [testng] [2024-10-05 03:59:19,937] [pool-1-thread-10] Initializing /data/samples/dimension-mismatch/1/acqp: 
   [testng] 03:59:19,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:59:19,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:19,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_03-59-19.log]
   [testng] 03:59:19,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748dac42 - End of configuration.
   [testng] [2024-10-05 03:59:21,001] [pool-1-thread-9] Initializing /data/wis/tiffs/hd111104p3_sH3_scan2_slice3.tif: 
   [testng] 03:59:21,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:59:21,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:21,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_03-59-21.log]
   [testng] 03:59:21,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@633055dc - End of configuration.
   [testng] [2024-10-05 03:59:21,980] [pool-1-thread-8] Initializing /data/wis/tiffs/hd111104p3_sH3_scan3_slice1_echo1.tif: 
   [testng] 03:59:21,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:59:21,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:21,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_03-59-21.log]
   [testng] 03:59:21,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e21092d - End of configuration.
   [testng] [2024-10-05 03:59:22,980] [pool-1-thread-7] Initializing /data/wis/tiffs/hd111104p3_sH3_scan3_slice1_echo6.tif: 
   [testng] 03:59:22,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:59:22,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:22,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_03-59-22.log]
   [testng] 03:59:22,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4944ac4d - End of configuration.
   [testng] [2024-10-05 03:59:24,016] [pool-1-thread-6] Initializing /data/wis/tiffs/hd111104p3_sH3_scan2_slice1.tif: 
   [testng] 03:59:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:59:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:24,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_03-59-24.log]
   [testng] 03:59:24,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ef87e45 - End of configuration.
   [testng] [2024-10-05 03:59:25,000] [pool-1-thread-5] Initializing /data/wis/tiffs/RAf_100110_091_Scan3_Slice5.tif: 
   [testng] 03:59:25,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:59:25,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:25,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_03-59-25.log]
   [testng] 03:59:25,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368ec75c - End of configuration.
   [testng] [2024-10-05 03:59:26,067] [pool-1-thread-4] Initializing /data/wis/RA_060110.051/1/acqp: 
   [testng] 03:59:26,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:59:26,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:26,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_03-59-26.log]
   [testng] 03:59:26,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae25506 - End of configuration.
   [testng] [2024-10-05 03:59:28,561] [pool-1-thread-3] Initializing /data/wis/tiffs/hd111104p3_sH3_scan1_slice1.tif: 
   [testng] 03:59:28,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:59:28,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:28,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_03-59-28.log]
   [testng] 03:59:28,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa329f9 - End of configuration.
   [testng] [2024-10-05 03:59:29,630] [pool-1-thread-2] Initializing /data/wis/tiffs/RA_060110_051_scan2_slice6.tif: 
   [testng] 03:59:29,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:59:29,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:59:29,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_03-59-29.log]
   [testng] 03:59:29,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55318f3d - End of configuration.
   [testng] [2024-10-05 03:59:38,221] [pool-1-thread-12] Initializing /data/wis/tiffs/RAf_100110_091_Scan7_Slice9_TR6.tif: 
   [testng] [2024-10-05 03:59:39,303] [pool-1-thread-5] Initializing /data/wis/tiffs/RA_060110_051_scan6_slice5.tif: 
   [testng] [2024-10-05 03:59:40,349] [pool-1-thread-2] Initializing /data/wis/tiffs/hd111104p3_sH3_scan5_slice1.tif: 
   [testng] [2024-10-05 03:59:41,386] [pool-1-thread-1] Initializing /data/wis/tiffs/RAf_100110_091_Scan8_Slice9_diff15.tif: 
   [testng] [2024-10-05 03:59:42,382] [pool-1-thread-11] Initializing /data/wis/RA_240912_m1.g71/1/acqp: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 26 minutes 25 seconds
Finished: SUCCESS