Started by upstream project "BIOFORMATS-test-repo" build number 210
originally caused by:
Started by upstream project "Trigger" build number 236
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2200192080237281607.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33430_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 04:23:35,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:23:35,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 04:23:35,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:23:35,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:23:35,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:23:35,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:23:35,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:23:35,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:23:35,167 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:23:35,167 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:23:35,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:23:35,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:23:35,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:23:35,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:23:35,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:23:35,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:23:35,360 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:23:35,361 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:23:35,361 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:23:35,361 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:23:35,361 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 04:23:35,362 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 04:23:35,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-05 04:23:35,371] [main] java.version = 11.0.16
[testng] 04:23:35,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:23:35,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:35,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_04-23-35.log]
[testng] 04:23:35,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-10-05 04:23:35,423] [main] testng.directory = /data
[testng] [2024-10-05 04:23:35,423] [main] testng.configDirectory = /config
[testng] [2024-10-05 04:23:35,433] [main] testng.multiplier = 1.0
[testng] [2024-10-05 04:23:35,435] [main] testng.in-memory = false
[testng] [2024-10-05 04:23:35,435] [main] testng.allow-missing = false
[testng] [2024-10-05 04:23:35,435] [main] user.language = en
[testng] [2024-10-05 04:23:35,435] [main] user.country = ${user.country}
[testng] [2024-10-05 04:23:35,435] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-05 04:23:38,448] [main] ----------------------------------------
[testng] [2024-10-05 04:23:38,448] [main] Total files: 22
[testng] [2024-10-05 04:23:38,448] [main] Scan time: 3.013 s (136 ms/file)
[testng] [2024-10-05 04:23:38,448] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-05 04:23:50,854] [pool-1-thread-1] Initializing /data/converted/dub01.pic:
[testng] 04:23:50,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:23:50,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:50,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_04-23-50.log]
[testng] 04:23:50,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b2007ca - End of configuration.
[testng] [2024-10-05 04:23:51,115] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 04:23:51,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:23:51,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:51,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_04-23-51.log]
[testng] 04:23:51,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@474d4e42 - End of configuration.
[testng] [2024-10-05 04:23:51,737] [pool-1-thread-11] Initializing /data/converted/clown.ipw:
[testng] 04:23:51,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:23:51,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:51,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_04-23-51.log]
[testng] 04:23:51,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da9470e - End of configuration.
[testng] [2024-10-05 04:23:52,001] [pool-1-thread-10] Initializing /data/samples/HEART.SEQ:
[testng] 04:23:52,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:23:52,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:52,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_04-23-52.log]
[testng] 04:23:52,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1995b358 - End of configuration.
[testng] [2024-10-05 04:23:52,273] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw:
[testng] 04:23:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:23:52,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:52,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_04-23-52.log]
[testng] 04:23:52,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349345fa - End of configuration.
[testng] [2024-10-05 04:23:52,533] [pool-1-thread-8] Initializing /data/converted/dub01.seq:
[testng] 04:23:52,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:23:52,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:52,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_04-23-52.log]
[testng] 04:23:52,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c05f47a - End of configuration.
[testng] [2024-10-05 04:23:52,815] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips:
[testng] 04:23:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:23:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:52,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_04-23-52.log]
[testng] 04:23:52,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7667eb9e - End of configuration.
[testng] [2024-10-05 04:23:53,072] [pool-1-thread-6] Initializing /data/converted/clown.tif:
[testng] 04:23:53,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:23:53,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:53,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_04-23-53.log]
[testng] 04:23:53,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bf3f847 - End of configuration.
[testng] [2024-10-05 04:23:53,317] [pool-1-thread-5] Initializing /data/xiuwen/head2.seq:
[testng] 04:23:53,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:23:53,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:53,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_04-23-53.log]
[testng] 04:23:53,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eccac63 - End of configuration.
[testng] [2024-10-05 04:23:53,634] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 04:23:53,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:23:53,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:53,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_04-23-53.log]
[testng] 04:23:53,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a6daf5c - End of configuration.
[testng] [2024-10-05 04:23:53,909] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF:
[testng] 04:23:53,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:23:53,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:53,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_04-23-53.log]
[testng] 04:23:53,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60cb4eda - End of configuration.
[testng] [2024-10-05 04:23:54,589] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF:
[testng] 04:23:54,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:23:54,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:23:54,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_04-23-54.log]
[testng] 04:23:54,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60a819c8 - End of configuration.
[testng] [2024-10-05 04:23:58,767] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-10-05 04:23:59,068] [pool-1-thread-6] Initializing /data/converted/clown8c.seq:
[testng] [2024-10-05 04:23:59,397] [pool-1-thread-11] Initializing /data/samples/PROBE.TIF:
[testng] [2024-10-05 04:23:59,690] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-10-05 04:24:00,364] [pool-1-thread-10] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-10-05 04:24:00,642] [pool-1-thread-8] Initializing /data/converted/dub01.ipw:
[testng] [2024-10-05 04:24:00,884] [pool-1-thread-4] Initializing /data/converted/clown.seq:
[testng] [2024-10-05 04:24:01,848] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-10-05 04:24:02,538] [pool-1-thread-2] Initializing /data/converted/clown8c.ipw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 49 seconds
Finished: SUCCESS