Started by upstream project "BIOFORMATS-test-repo" build number 211
originally caused by:
Started by upstream project "Trigger" build number 237
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16654919840854851481.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33479_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:37:22,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:37:22,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:37:22,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:37:22,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:37:22,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:37:22,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:37:22,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:37:22,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:37:22,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:37:22,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:37:22,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:37:22,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:37:22,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:37:22,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:37:22,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:37:22,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:37:22,498 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:37:22,498 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:37:22,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:37:22,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:37:22,498 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:37:22,499 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:37:22,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-06 01:37:22,507] [main] java.version = 17.0.2
[testng] 01:37:22,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:37:22,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:22,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_01-37-22.log]
[testng] 01:37:22,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-10-06 01:37:22,554] [main] testng.directory = /data
[testng] [2024-10-06 01:37:22,555] [main] testng.configDirectory = /config
[testng] [2024-10-06 01:37:22,563] [main] testng.multiplier = 1.0
[testng] [2024-10-06 01:37:22,564] [main] testng.in-memory = false
[testng] [2024-10-06 01:37:22,564] [main] testng.allow-missing = false
[testng] [2024-10-06 01:37:22,564] [main] user.language = en
[testng] [2024-10-06 01:37:22,564] [main] user.country = ${user.country}
[testng] [2024-10-06 01:37:22,564] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-06 01:37:23,249] [main] ----------------------------------------
[testng] [2024-10-06 01:37:23,249] [main] Total files: 14
[testng] [2024-10-06 01:37:23,249] [main] Scan time: 0.685 s (48 ms/file)
[testng] [2024-10-06 01:37:23,249] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-06 01:37:35,873] [pool-1-thread-1] Initializing /data/samples/BigTIFFLong.tif:
[testng] 01:37:35,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:37:35,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:35,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_01-37-35.log]
[testng] 01:37:35,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62aad765 - End of configuration.
[testng] [2024-10-06 01:37:36,027] [pool-1-thread-12] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 01:37:36,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:37:36,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_01-37-36.log]
[testng] 01:37:36,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@137c26d7 - End of configuration.
[testng] [2024-10-06 01:37:36,170] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 01:37:36,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:37:36,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_01-37-36.log]
[testng] 01:37:36,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc9ed8b - End of configuration.
[testng] [2024-10-06 01:37:36,315] [pool-1-thread-10] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 01:37:36,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:37:36,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_01-37-36.log]
[testng] 01:37:36,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339b87b1 - End of configuration.
[testng] [2024-10-06 01:37:36,435] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 01:37:36,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:37:36,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_01-37-36.log]
[testng] 01:37:36,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4419bd - End of configuration.
[testng] [2024-10-06 01:37:36,549] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 01:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_01-37-36.log]
[testng] 01:37:36,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed86642 - End of configuration.
[testng] [2024-10-06 01:37:36,649] [pool-1-thread-7] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 01:37:36,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:37:36,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_01-37-36.log]
[testng] 01:37:36,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7339ac33 - End of configuration.
[testng] [2024-10-06 01:37:36,744] [pool-1-thread-6] Initializing /data/carlsen/Olympics8.tif:
[testng] 01:37:36,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:37:36,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_01-37-36.log]
[testng] 01:37:36,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46eaab39 - End of configuration.
[testng] [2024-10-06 01:37:36,837] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 01:37:36,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:37:36,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_01-37-36.log]
[testng] 01:37:36,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cc52d5d - End of configuration.
[testng] [2024-10-06 01:37:36,944] [pool-1-thread-4] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 01:37:36,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:37:36,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:36,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_01-37-36.log]
[testng] 01:37:36,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b86fc93 - End of configuration.
[testng] [2024-10-06 01:37:38,983] [pool-1-thread-3] Initializing /data/samples/BigTIFF.tif:
[testng] 01:37:38,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:37:38,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:38,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_01-37-38.log]
[testng] 01:37:38,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c7a370e - End of configuration.
[testng] [2024-10-06 01:37:39,061] [pool-1-thread-2] Initializing /data/samples/Classic.tif:
[testng] 01:37:39,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:37:39,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:39,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_01-37-39.log]
[testng] 01:37:39,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353a6f3e - End of configuration.
[testng] [2024-10-06 01:37:42,821] [pool-1-thread-1] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS