Started by upstream project "BIOFORMATS-test-repo" build number 211
originally caused by:
 Started by upstream project "Trigger" build number 237
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4410297963359836960.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33585_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:55:32,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:55:32,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 03:55:32,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:55:32,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:55:32,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:55:32,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:55:32,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:55:32,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:55:32,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:55:32,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:55:32,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:55:32,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:55:32,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:55:32,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:55:32,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:55:32,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:55:32,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:55:32,953 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:55:32,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:55:32,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:55:32,954 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 03:55:32,955 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 03:55:32,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-06 03:55:32,963] [main] java.version = 17.0.2
   [testng] 03:55:32,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:55:32,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:55:33,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_03-55-32.log]
   [testng] 03:55:33,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-10-06 03:55:33,012] [main] testng.directory = /data
   [testng] [2024-10-06 03:55:33,012] [main] testng.configDirectory = /config
   [testng] [2024-10-06 03:55:33,020] [main] testng.multiplier = 1.0
   [testng] [2024-10-06 03:55:33,021] [main] testng.in-memory = false
   [testng] [2024-10-06 03:55:33,021] [main] testng.allow-missing = false
   [testng] [2024-10-06 03:55:33,021] [main] user.language = en
   [testng] [2024-10-06 03:55:33,021] [main] user.country = ${user.country}
   [testng] [2024-10-06 03:55:33,022] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-06 03:55:41,386] [main] ----------------------------------------
   [testng] [2024-10-06 03:55:41,386] [main] Total files: 23
   [testng] [2024-10-06 03:55:41,387] [main] Scan time: 8.364 s (363 ms/file)
   [testng] [2024-10-06 03:55:41,387] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-06 03:56:03,640] [pool-1-thread-1] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] 03:56:03,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:56:03,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:03,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_03-56-03.log]
   [testng] 03:56:03,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183aada5 - End of configuration.
   [testng] [2024-10-06 03:56:04,161] [pool-1-thread-12] Initializing /data/qa-17334/volume4d.nii: 
   [testng] 03:56:04,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:56:04,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:04,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_03-56-04.log]
   [testng] 03:56:04,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25df1e1f - End of configuration.
   [testng] [2024-10-06 03:56:04,607] [pool-1-thread-11] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] 03:56:04,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:56:04,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:04,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_03-56-04.log]
   [testng] 03:56:04,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c51fcfb - End of configuration.
   [testng] [2024-10-06 03:56:05,061] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 03:56:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:56:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_03-56-05.log]
   [testng] 03:56:05,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295cf312 - End of configuration.
   [testng] [2024-10-06 03:56:05,527] [pool-1-thread-9] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] 03:56:05,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:56:05,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_03-56-05.log]
   [testng] 03:56:05,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f72a8d5 - End of configuration.
   [testng] [2024-10-06 03:56:05,973] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] 03:56:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:56:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:05,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_03-56-05.log]
   [testng] 03:56:05,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d5e77fb - End of configuration.
   [testng] [2024-10-06 03:56:06,387] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 03:56:06,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:56:06,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:06,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_03-56-06.log]
   [testng] 03:56:06,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446d5c89 - End of configuration.
   [testng] [2024-10-06 03:56:06,819] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] 03:56:06,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:56:06,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:06,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_03-56-06.log]
   [testng] 03:56:06,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31bf09ca - End of configuration.
   [testng] [2024-10-06 03:56:07,267] [pool-1-thread-5] Initializing /data/public/NIH/minimal.hdr: 
   [testng] 03:56:07,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:56:07,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:07,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_03-56-07.log]
   [testng] 03:56:07,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0d4ea3 - End of configuration.
   [testng] [2024-10-06 03:56:07,745] [pool-1-thread-4] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] 03:56:07,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:56:07,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:07,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_03-56-07.log]
   [testng] 03:56:07,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540a7e8e - End of configuration.
   [testng] [2024-10-06 03:56:08,189] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] 03:56:08,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:56:08,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:08,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_03-56-08.log]
   [testng] 03:56:08,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@637d051c - End of configuration.
   [testng] [2024-10-06 03:56:10,163] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] 03:56:10,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:56:10,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:56:10,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_03-56-10.log]
   [testng] 03:56:10,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fdeb39c - End of configuration.
   [testng] [2024-10-06 03:56:15,733] [pool-1-thread-4] Initializing /data/public/NIH/minimal.nii: 
   [testng] [2024-10-06 03:56:16,178] [pool-1-thread-8] Initializing /data/public/NIH/zstat1.nii: 
   [testng] [2024-10-06 03:56:16,703] [pool-1-thread-12] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] [2024-10-06 03:56:18,836] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] [2024-10-06 03:56:20,230] [pool-1-thread-1] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] [2024-10-06 03:56:24,964] [pool-1-thread-9] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] [2024-10-06 03:56:25,459] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] [2024-10-06 03:56:25,932] [pool-1-thread-11] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 32 seconds
Finished: SUCCESS