Started by upstream project "BIOFORMATS-test-repo" build number 212 originally caused by: Started by upstream project "Trigger" build number 238 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9854196489027006212.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_33686_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:31:58,683 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:31:58,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:31:58,685 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:31:58,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:31:58,686 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:31:58,686 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:31:58,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:31:58,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:31:58,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:31:58,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:31:58,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:31:58,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:31:58,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:31:58,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:31:58,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:31:58,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:31:58,986 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:31:58,986 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:31:58,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:31:58,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:31:58,986 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:31:58,987 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:31:58,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-07 02:31:58,998] [main] java.version = 1.8.0_342 [testng] 02:31:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:31:59,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:59,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-07_02-31-59.log] [testng] 02:31:59,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-07 02:31:59,071] [main] testng.directory = /data [testng] [2024-10-07 02:31:59,072] [main] testng.configDirectory = /config [testng] [2024-10-07 02:31:59,086] [main] testng.multiplier = 1.0 [testng] [2024-10-07 02:31:59,086] [main] testng.in-memory = false [testng] [2024-10-07 02:31:59,087] [main] testng.allow-missing = false [testng] [2024-10-07 02:31:59,087] [main] user.language = fr [testng] [2024-10-07 02:31:59,087] [main] user.country = FR [testng] [2024-10-07 02:31:59,087] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-07 02:32:02,189] [main] ---------------------------------------- [testng] [2024-10-07 02:32:02,189] [main] Total files: 40 [testng] [2024-10-07 02:32:02,189] [main] Scan time: 3.102 s (77 ms/file) [testng] [2024-10-07 02:32:02,189] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-07 02:32:46,766] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:32:46,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:32:46,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:46,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-07_02-32-46.log] [testng] 02:32:46,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207af893 - End of configuration. [testng] [2024-10-07 02:32:47,014] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:32:47,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:32:47,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-07_02-32-47.log] [testng] 02:32:47,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a285400 - End of configuration. [testng] [2024-10-07 02:32:47,204] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 02:32:47,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:32:47,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-07_02-32-47.log] [testng] 02:32:47,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df245e7 - End of configuration. [testng] [2024-10-07 02:32:47,328] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 02:32:47,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:32:47,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-07_02-32-47.log] [testng] 02:32:47,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153767ac - End of configuration. [testng] [2024-10-07 02:32:47,564] [pool-1-thread-9] Initializing /data/william/worm.avi: [testng] 02:32:47,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:32:47,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-07_02-32-47.log] [testng] 02:32:47,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb8f947 - End of configuration. [testng] [2024-10-07 02:32:47,729] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:32:47,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:32:47,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-07_02-32-47.log] [testng] 02:32:47,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b32f768 - End of configuration. [testng] [2024-10-07 02:32:47,904] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:32:47,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:32:47,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:47,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-07_02-32-47.log] [testng] 02:32:47,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d99c011 - End of configuration. [testng] [2024-10-07 02:32:48,137] [pool-1-thread-6] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] 02:32:48,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:32:48,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:48,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-07_02-32-48.log] [testng] 02:32:48,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191df0d0 - End of configuration. [testng] [2024-10-07 02:32:48,358] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 02:32:48,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:32:48,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:48,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-07_02-32-48.log] [testng] 02:32:48,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@350116d5 - End of configuration. [testng] [2024-10-07 02:32:48,576] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:32:48,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:32:48,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:48,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-07_02-32-48.log] [testng] 02:32:48,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5cf7d7 - End of configuration. [testng] [2024-10-07 02:32:48,789] [pool-1-thread-3] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:32:48,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:32:48,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:48,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-07_02-32-48.log] [testng] 02:32:48,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50742bf5 - End of configuration. [testng] [2024-10-07 02:32:49,040] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:32:49,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:32:49,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:49,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-07_02-32-49.log] [testng] 02:32:49,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368917e - End of configuration. [testng] [2024-10-07 02:32:52,138] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-10-07 02:32:52,345] [pool-1-thread-5] Initializing /data/ascb/TIRF.avi: [testng] [2024-10-07 02:32:52,533] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-10-07 02:32:52,751] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-10-07 02:32:52,960] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-10-07 02:32:53,161] [pool-1-thread-11] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-10-07 02:32:53,347] [pool-1-thread-6] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-10-07 02:32:53,604] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-10-07 02:32:53,811] [pool-1-thread-7] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-10-07 02:32:54,089] [pool-1-thread-1] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-10-07 02:32:54,384] [pool-1-thread-10] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2024-10-07 02:32:54,576] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-10-07 02:32:58,135] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-10-07 02:32:58,334] [pool-1-thread-10] Initializing /data/kurt/40x_6um.avi: [testng] [2024-10-07 02:32:58,612] [pool-1-thread-7] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-10-07 02:32:58,803] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-10-07 02:32:58,924] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-10-07 02:32:59,066] [pool-1-thread-12] Initializing /data/kurt/63x_6um.avi: [testng] [2024-10-07 02:32:59,240] [pool-1-thread-4] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-10-07 02:32:59,385] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-10-07 02:32:59,592] [pool-1-thread-5] Initializing /data/chris/APZ04_009.avi: [testng] [2024-10-07 02:33:00,605] [pool-1-thread-6] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-10-07 02:33:00,889] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-10-07 02:33:02,649] [pool-1-thread-4] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-10-07 02:33:03,129] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-10-07 02:33:03,341] [pool-1-thread-8] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 17 seconds Finished: SUCCESS