Started by upstream project "BIOFORMATS-test-repo" build number 212 originally caused by: Started by upstream project "Trigger" build number 238 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8606522804980422767.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_33695_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:50:19,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:50:19,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:50:19,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:50:19,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:50:19,301 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:50:19,301 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:50:19,301 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:50:19,302 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:50:19,302 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:50:19,302 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:50:19,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 1118 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-07 02:50:19,312] [main] java.version = 1.8.0_342 [testng] 02:50:19,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:50:19,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:19,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-07_02-50-19.log] [testng] 02:50:19,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-07 02:50:19,364] [main] testng.directory = /data [testng] [2024-10-07 02:50:19,364] [main] testng.configDirectory = /config [testng] [2024-10-07 02:50:19,377] [main] testng.multiplier = 1.0 [testng] [2024-10-07 02:50:19,378] [main] testng.in-memory = false [testng] [2024-10-07 02:50:19,378] [main] testng.allow-missing = false [testng] [2024-10-07 02:50:19,378] [main] user.language = fr [testng] [2024-10-07 02:50:19,378] [main] user.country = FR [testng] [2024-10-07 02:50:19,378] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-07 02:50:20,290] [main] ---------------------------------------- [testng] [2024-10-07 02:50:20,290] [main] Total files: 19 [testng] [2024-10-07 02:50:20,290] [main] Scan time: 0.912 s (48 ms/file) [testng] [2024-10-07 02:50:20,290] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-07 02:50:27,563] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 02:50:27,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:50:27,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:27,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-07_02-50-27.log] [testng] 02:50:27,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684687d9 - End of configuration. [testng] [2024-10-07 02:50:27,976] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:50:27,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:50:27,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:27,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-07_02-50-27.log] [testng] 02:50:27,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@718efea - End of configuration. [testng] [2024-10-07 02:50:28,377] [pool-1-thread-11] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:50:28,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:50:28,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:28,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-07_02-50-28.log] [testng] 02:50:28,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e10a14e - End of configuration. [testng] [2024-10-07 02:50:28,765] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 02:50:28,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:50:28,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:28,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-07_02-50-28.log] [testng] 02:50:28,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719561d4 - End of configuration. [testng] [2024-10-07 02:50:29,394] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW: [testng] 02:50:29,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:50:29,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:29,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-07_02-50-29.log] [testng] 02:50:29,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696418d - End of configuration. [testng] [2024-10-07 02:50:29,660] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 02:50:29,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:50:29,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:29,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-07_02-50-29.log] [testng] 02:50:29,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration. [testng] [2024-10-07 02:50:30,041] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:50:30,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:50:30,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:30,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-07_02-50-30.log] [testng] 02:50:30,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a770581 - End of configuration. [testng] [2024-10-07 02:50:30,486] [pool-1-thread-6] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:50:30,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:50:30,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:30,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-07_02-50-30.log] [testng] 02:50:30,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5052 - End of configuration. [testng] [2024-10-07 02:50:30,869] [pool-1-thread-5] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:50:30,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:50:30,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:30,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-07_02-50-30.log] [testng] 02:50:30,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19510582 - End of configuration. [testng] [2024-10-07 02:50:31,283] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 02:50:31,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:50:31,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:31,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-07_02-50-31.log] [testng] 02:50:31,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2024-10-07 02:50:31,790] [pool-1-thread-3] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:50:31,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:50:31,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:31,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-07_02-50-31.log] [testng] 02:50:31,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration. [testng] [2024-10-07 02:50:32,192] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:50:32,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:50:32,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:32,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-07_02-50-32.log] [testng] 02:50:32,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4886a3 - End of configuration. [testng] [2024-10-07 02:50:42,296] [pool-1-thread-11] Initializing /data/samples/400R PICT0003.MRW: [testng] [2024-10-07 02:50:42,613] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-10-07 02:50:42,947] [pool-1-thread-3] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-10-07 02:50:43,288] [pool-1-thread-9] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-10-07 02:50:43,622] [pool-1-thread-5] Initializing /data/samples/100R PICT0001.MRW: [testng] [2024-10-07 02:50:44,009] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] [2024-10-07 02:50:44,363] [pool-1-thread-10] Initializing /data/samples/800R PICT0010.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS