Started by upstream project "BIOFORMATS-test-repo" build number 212
originally caused by:
Started by upstream project "Trigger" build number 238
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14736935569204065152.sh
+ '[' leica-scn = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33725_merge_ci -v /uod/idr/repos/curated/leica-scn:/data -v /uod/idr-scratch/merge-ci/curated/leica-scn:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:20:22,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:20:22,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 03:20:22,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:20:22,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:20:22,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:20:22,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:20:22,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:20:22,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:20:22,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:20:22,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:20:22,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:20:22,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:20:22,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:20:22,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:20:22,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:20:22,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:20:22,335 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:20:22,335 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:20:22,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:20:22,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:20:22,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 03:20:22,336 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 03:20:22,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-07 03:20:22,346] [main] java.version = 1.8.0_342
[testng] 03:20:22,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:20:22,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:22,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-07_03-20-22.log]
[testng] 03:20:22,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-10-07 03:20:22,398] [main] testng.directory = /data
[testng] [2024-10-07 03:20:22,398] [main] testng.configDirectory = /config
[testng] [2024-10-07 03:20:22,410] [main] testng.multiplier = 1.0
[testng] [2024-10-07 03:20:22,411] [main] testng.in-memory = false
[testng] [2024-10-07 03:20:22,411] [main] testng.allow-missing = false
[testng] [2024-10-07 03:20:22,411] [main] user.language = fr
[testng] [2024-10-07 03:20:22,411] [main] user.country = FR
[testng] [2024-10-07 03:20:22,411] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-07 03:20:34,960] [main] ----------------------------------------
[testng] [2024-10-07 03:20:34,960] [main] Total files: 12
[testng] [2024-10-07 03:20:34,960] [main] Scan time: 12.549 s (1045 ms/file)
[testng] [2024-10-07 03:20:34,960] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-07 03:20:40,118] [pool-1-thread-1] Initializing /data/scott/Oral_Biology_13 (1).scn:
[testng] 03:20:40,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:20:40,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:40,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-07_03-20-40.log]
[testng] 03:20:40,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@720e6985 - End of configuration.
[testng] [2024-10-07 03:20:40,587] [pool-1-thread-12] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 fullresolution.jpg:
[testng] 03:20:40,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:20:40,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:40,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-07_03-20-40.log]
[testng] 03:20:40,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6ff447 - End of configuration.
[testng] [2024-10-07 03:20:40,663] [pool-1-thread-11] Initializing /data/qa-10469/Slide_907790L_DAPI_Ki67.scn:
[testng] 03:20:40,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:20:40,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:40,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-07_03-20-40.log]
[testng] 03:20:40,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c22d1a8 - End of configuration.
[testng] [2024-10-07 03:20:40,983] [pool-1-thread-10] Initializing /data/public/openslide/Leica-3/Leica-3.scn:
[testng] 03:20:40,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:20:40,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:40,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-07_03-20-40.log]
[testng] 03:20:40,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578fe242 - End of configuration.
[testng] [2024-10-07 03:20:41,351] [pool-1-thread-9] Initializing /data/public/openslide/Leica-1/Leica-1.scn:
[testng] 03:20:41,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:20:41,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:41,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-07_03-20-41.log]
[testng] 03:20:41,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2c77aa - End of configuration.
[testng] [2024-10-07 03:20:41,779] [pool-1-thread-8] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 opened usig LOCI.tif:
[testng] 03:20:41,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:20:41,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:41,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-07_03-20-41.log]
[testng] 03:20:41,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462c436b - End of configuration.
[testng] [2024-10-07 03:20:42,207] [pool-1-thread-7] Initializing /data/qa-11049/HP15.4994_2015-04-28.scn:
[testng] 03:20:42,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:20:42,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:42,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-07_03-20-42.log]
[testng] 03:20:42,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66b12d5a - End of configuration.
[testng] [2024-10-07 03:20:43,081] [pool-1-thread-6] Initializing /data/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn:
[testng] 03:20:43,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:20:43,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:43,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-07_03-20-43.log]
[testng] 03:20:43,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2c9bdf - End of configuration.
[testng] [2024-10-07 03:20:43,526] [pool-1-thread-5] Initializing /data/scott/ImageCollection_0000000418_2010-10-27 13_31_31Z.scn:
[testng] 03:20:43,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:20:43,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:43,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-07_03-20-43.log]
[testng] 03:20:43,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142f5952 - End of configuration.
[testng] [2024-10-07 03:20:43,909] [pool-1-thread-4] Initializing /data/qa-17671/132223-12_022a1963-b32e-467f-8242-b51a5295951f.SCN:
[testng] 03:20:43,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:20:43,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:43,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-07_03-20-43.log]
[testng] 03:20:43,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e03210d - End of configuration.
[testng] [2024-10-07 03:20:44,525] [pool-1-thread-3] Initializing /data/public/openslide/Leica-2/Leica-2.scn:
[testng] 03:20:44,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:20:44,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:44,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-07_03-20-44.log]
[testng] 03:20:44,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@285b053a - End of configuration.
[testng] [2024-10-07 03:20:45,196] [pool-1-thread-2] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46.scn:
[testng] 03:20:45,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:20:45,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:20:45,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-07_03-20-45.log]
[testng] 03:20:45,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a3be7f - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 33 seconds
Finished: SUCCESS