Started by upstream project "BIOFORMATS-test-repo" build number 213
originally caused by:
Started by upstream project "Trigger" build number 240
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3058990842619499688.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33779_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 06:11:46,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:11:46,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:11:46,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:11:46,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:11:46,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:11:46,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:11:46,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:11:46,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:11:47,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:11:47,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:11:47,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:11:47,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:11:47,101 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:11:47,101 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:11:47,102 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:11:47,102 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:11:47,102 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 06:11:47,103 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 06:11:47,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 364 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-08 06:11:47,113] [main] java.version = 11.0.16
[testng] 06:11:47,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:11:47,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:47,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-11-47.log]
[testng] 06:11:47,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-08 06:11:47,162] [main] testng.directory = /data
[testng] [2024-10-08 06:11:47,162] [main] testng.configDirectory = /config
[testng] [2024-10-08 06:11:47,172] [main] testng.multiplier = 1.0
[testng] [2024-10-08 06:11:47,182] [main] testng.in-memory = false
[testng] [2024-10-08 06:11:47,183] [main] testng.allow-missing = false
[testng] [2024-10-08 06:11:47,183] [main] user.language = en
[testng] [2024-10-08 06:11:47,183] [main] user.country = ${user.country}
[testng] [2024-10-08 06:11:47,183] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-08 06:11:48,095] [main] ----------------------------------------
[testng] [2024-10-08 06:11:48,095] [main] Total files: 21
[testng] [2024-10-08 06:11:48,096] [main] Scan time: 0.912 s (43 ms/file)
[testng] [2024-10-08 06:11:48,096] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-08 06:11:52,630] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim:
[testng] 06:11:52,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:11:52,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:52,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-11-52.log]
[testng] 06:11:52,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ae7efce - End of configuration.
[testng] [2024-10-08 06:11:52,815] [pool-1-thread-12] Initializing /data/venu/Kontrolle0012.lim:
[testng] 06:11:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:11:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:52,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-11-52.log]
[testng] 06:11:52,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56af1680 - End of configuration.
[testng] [2024-10-08 06:11:52,978] [pool-1-thread-11] Initializing /data/venu/Kontrolle0007.lim:
[testng] 06:11:52,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:11:52,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:52,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-11-52.log]
[testng] 06:11:52,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24b27296 - End of configuration.
[testng] [2024-10-08 06:11:53,141] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim:
[testng] 06:11:53,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:11:53,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-11-53.log]
[testng] 06:11:53,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ba78a1 - End of configuration.
[testng] [2024-10-08 06:11:53,308] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim:
[testng] 06:11:53,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:11:53,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-11-53.log]
[testng] 06:11:53,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd1e5b7 - End of configuration.
[testng] [2024-10-08 06:11:53,476] [pool-1-thread-8] Initializing /data/venu/Kontrolle0020.lim:
[testng] 06:11:53,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:11:53,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-11-53.log]
[testng] 06:11:53,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@234d90b4 - End of configuration.
[testng] [2024-10-08 06:11:53,652] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim:
[testng] 06:11:53,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:11:53,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-11-53.log]
[testng] 06:11:53,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4487e9f1 - End of configuration.
[testng] [2024-10-08 06:11:53,819] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim:
[testng] 06:11:53,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:11:53,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-11-53.log]
[testng] 06:11:53,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7acd6af - End of configuration.
[testng] [2024-10-08 06:11:53,960] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim:
[testng] 06:11:53,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:11:53,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:53,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-11-53.log]
[testng] 06:11:53,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a446b4f - End of configuration.
[testng] [2024-10-08 06:11:54,107] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim:
[testng] 06:11:54,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:11:54,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:54,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-11-54.log]
[testng] 06:11:54,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e207fca - End of configuration.
[testng] [2024-10-08 06:11:54,285] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim:
[testng] 06:11:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:11:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:54,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-11-54.log]
[testng] 06:11:54,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c5d0f31 - End of configuration.
[testng] [2024-10-08 06:11:54,471] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim:
[testng] 06:11:54,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:11:54,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:11:54,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-11-54.log]
[testng] 06:11:54,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43190b0 - End of configuration.
[testng] [2024-10-08 06:12:00,105] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-10-08 06:12:00,380] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-10-08 06:12:00,657] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim:
[testng] [2024-10-08 06:12:00,916] [pool-1-thread-3] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-10-08 06:12:01,178] [pool-1-thread-4] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-10-08 06:12:01,452] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-10-08 06:12:01,657] [pool-1-thread-9] Initializing /data/venu/Kontrolle0005.lim:
[testng] [2024-10-08 06:12:01,914] [pool-1-thread-1] Initializing /data/venu/Kontrolle0021.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS