Started by upstream project "BIOFORMATS-test-repo" build number 213
originally caused by:
Started by upstream project "Trigger" build number 240
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4533434734587352466.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33780_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 06:12:08,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:12:08,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 06:12:08,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:12:08,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:12:08,183 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:12:08,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:12:08,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:12:08,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:12:08,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:12:08,399 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:12:08,400 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 06:12:08,401 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 06:12:08,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-08 06:12:08,410] [main] java.version = 11.0.16
[testng] 06:12:08,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:12:08,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:08,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-12-08.log]
[testng] 06:12:08,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-08 06:12:08,465] [main] testng.directory = /data
[testng] [2024-10-08 06:12:08,465] [main] testng.configDirectory = /config
[testng] [2024-10-08 06:12:08,475] [main] testng.multiplier = 1.0
[testng] [2024-10-08 06:12:08,477] [main] testng.in-memory = false
[testng] [2024-10-08 06:12:08,477] [main] testng.allow-missing = false
[testng] [2024-10-08 06:12:08,477] [main] user.language = en
[testng] [2024-10-08 06:12:08,477] [main] user.country = ${user.country}
[testng] [2024-10-08 06:12:08,477] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-08 06:12:25,350] [main] ----------------------------------------
[testng] [2024-10-08 06:12:25,350] [main] Total files: 21
[testng] [2024-10-08 06:12:25,350] [main] Scan time: 16.873 s (803 ms/file)
[testng] [2024-10-08 06:12:25,350] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-08 06:12:51,850] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 06:12:51,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:12:51,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:51,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-12-51.log]
[testng] 06:12:51,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bdd4e6e - End of configuration.
[testng] [2024-10-08 06:12:53,193] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 06:12:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:12:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:53,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-12-53.log]
[testng] 06:12:53,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61dcdbd - End of configuration.
[testng] [2024-10-08 06:12:54,585] [pool-1-thread-11] Initializing /data/stefan/001_q06.txt:
[testng] 06:12:54,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:12:54,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:54,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-12-54.log]
[testng] 06:12:54,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3731a9 - End of configuration.
[testng] [2024-10-08 06:12:56,109] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt:
[testng] 06:12:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:12:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:56,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-12-56.log]
[testng] 06:12:56,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6716dd6e - End of configuration.
[testng] [2024-10-08 06:12:58,048] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt:
[testng] 06:12:58,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:12:58,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:58,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-12-58.log]
[testng] 06:12:58,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@87a05bf - End of configuration.
[testng] [2024-10-08 06:12:59,030] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt:
[testng] 06:12:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:12:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:12:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-12-59.log]
[testng] 06:12:59,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41afccfe - End of configuration.
[testng] [2024-10-08 06:13:00,053] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt:
[testng] 06:13:00,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:13:00,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:00,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-13-00.log]
[testng] 06:13:00,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cb1339f - End of configuration.
[testng] [2024-10-08 06:13:00,942] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt:
[testng] 06:13:00,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:13:00,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:00,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-13-00.log]
[testng] 06:13:00,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66fa26cd - End of configuration.
[testng] [2024-10-08 06:13:02,385] [pool-1-thread-5] Initializing /data/stefan/001_q03.txt:
[testng] 06:13:02,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:13:02,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:02,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-13-02.log]
[testng] 06:13:02,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43675c6d - End of configuration.
[testng] [2024-10-08 06:13:03,273] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt:
[testng] 06:13:03,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:13:03,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:03,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-13-03.log]
[testng] 06:13:03,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45514198 - End of configuration.
[testng] [2024-10-08 06:13:04,893] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt:
[testng] 06:13:04,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:13:04,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:04,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-13-04.log]
[testng] 06:13:04,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b22d8c7 - End of configuration.
[testng] [2024-10-08 06:13:07,277] [pool-1-thread-2] Initializing /data/stefan/001_q09.txt:
[testng] 06:13:07,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:13:07,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:07,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-13-07.log]
[testng] 06:13:07,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc65396 - End of configuration.
[testng] [2024-10-08 06:13:22,531] [pool-1-thread-7] Initializing /data/stefan/001_q17.txt:
[testng] [2024-10-08 06:13:23,544] [pool-1-thread-1] Initializing /data/stefan/001_q13.txt:
[testng] [2024-10-08 06:13:24,803] [pool-1-thread-5] Initializing /data/stefan/001_q18.txt:
[testng] [2024-10-08 06:13:26,139] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] [2024-10-08 06:13:27,296] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt:
[testng] [2024-10-08 06:13:29,079] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 40 seconds
Finished: SUCCESS