Started by upstream project "BIOFORMATS-test-repo" build number 213 originally caused by: Started by upstream project "Trigger" build number 240 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14658923716903771568.sh + '[' fei = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33792_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:19:05,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:19:05,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 06:19:05,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:19:05,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:19:05,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:19:05,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:19:05,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:19:05,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:19:05,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:19:05,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:19:05,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:19:05,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:19:05,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:19:05,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:19:05,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:19:05,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:19:05,401 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:19:05,401 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:19:05,401 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:19:05,402 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:19:05,402 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 06:19:05,403 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 06:19:05,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 310 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 06:19:05,412] [main] java.version = 11.0.16 [testng] 06:19:05,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:19:05,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:05,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-19-05.log] [testng] 06:19:05,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 06:19:05,462] [main] testng.directory = /data [testng] [2024-10-08 06:19:05,462] [main] testng.configDirectory = /config [testng] [2024-10-08 06:19:05,472] [main] testng.multiplier = 1.0 [testng] [2024-10-08 06:19:05,544] [main] testng.in-memory = false [testng] [2024-10-08 06:19:05,544] [main] testng.allow-missing = false [testng] [2024-10-08 06:19:05,544] [main] user.language = en [testng] [2024-10-08 06:19:05,544] [main] user.country = ${user.country} [testng] [2024-10-08 06:19:05,544] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 06:19:07,946] [main] ---------------------------------------- [testng] [2024-10-08 06:19:07,946] [main] Total files: 21 [testng] [2024-10-08 06:19:07,946] [main] Scan time: 2.401 s (114 ms/file) [testng] [2024-10-08 06:19:07,946] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 06:19:12,447] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 06:19:12,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:19:12,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:12,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-19-12.log] [testng] 06:19:12,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f3563f - End of configuration. [testng] [2024-10-08 06:19:12,594] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF: [testng] 06:19:12,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:19:12,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:12,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-19-12.log] [testng] 06:19:12,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427610c2 - End of configuration. [testng] [2024-10-08 06:19:12,727] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG: [testng] 06:19:12,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:19:12,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:12,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-19-12.log] [testng] 06:19:12,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22061be2 - End of configuration. [testng] [2024-10-08 06:19:12,782] [pool-1-thread-10] Initializing /data/venu/VENU.TIF: [testng] 06:19:12,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:19:12,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:12,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-19-12.log] [testng] 06:19:12,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@363c78c3 - End of configuration. [testng] [2024-10-08 06:19:12,903] [pool-1-thread-9] Initializing /data/venu/VENU_Five.TIF: [testng] 06:19:12,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:19:12,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:12,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-19-12.log] [testng] 06:19:12,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75afd2ce - End of configuration. [testng] [2024-10-08 06:19:13,023] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF: [testng] 06:19:13,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:19:13,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-19-13.log] [testng] 06:19:13,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6614d - End of configuration. [testng] [2024-10-08 06:19:13,138] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 06:19:13,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:19:13,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-19-13.log] [testng] 06:19:13,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c852bd7 - End of configuration. [testng] [2024-10-08 06:19:13,299] [pool-1-thread-6] Initializing /data/venu/VENU01.IMG: [testng] 06:19:13,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:19:13,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-19-13.log] [testng] 06:19:13,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c63c66b - End of configuration. [testng] [2024-10-08 06:19:13,363] [pool-1-thread-5] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 06:19:13,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:19:13,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-19-13.log] [testng] 06:19:13,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4347985a - End of configuration. [testng] [2024-10-08 06:19:13,522] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF: [testng] 06:19:13,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:19:13,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-19-13.log] [testng] 06:19:13,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fd9e3cd - End of configuration. [testng] [2024-10-08 06:19:13,687] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF: [testng] 06:19:13,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:19:13,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-19-13.log] [testng] 06:19:13,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@149113f0 - End of configuration. [testng] [2024-10-08 06:19:13,858] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG: [testng] 06:19:13,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:19:13,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:13,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-19-13.log] [testng] 06:19:13,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f53afc4 - End of configuration. [testng] [2024-10-08 06:19:16,380] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF: [testng] [2024-10-08 06:19:16,613] [pool-1-thread-2] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] [2024-10-08 06:19:16,842] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [2024-10-08 06:19:16,985] [pool-1-thread-10] Initializing /data/venu/VENU_Seven.TIF: [testng] [2024-10-08 06:19:17,120] [pool-1-thread-8] Initializing /data/venu/VENU01.TIF: [testng] [2024-10-08 06:19:17,227] [pool-1-thread-12] Initializing /data/steffen/Batman_008.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS