Started by upstream project "BIOFORMATS-test-repo" build number 213 originally caused by: Started by upstream project "Trigger" build number 240 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7781866463528081559.sh + '[' bigtiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33807_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:28:18,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:28:18,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:28:18,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:28:18,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:28:18,660 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:28:18,660 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:28:18,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:28:18,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:28:18,662 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration. [testng] 06:28:18,662 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point [testng] 06:28:18,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 397 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 06:28:18,672] [main] java.version = 11.0.16 [testng] 06:28:18,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:28:18,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:18,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-28-18.log] [testng] 06:28:18,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 06:28:18,725] [main] testng.directory = /data [testng] [2024-10-08 06:28:18,725] [main] testng.configDirectory = /config [testng] [2024-10-08 06:28:18,736] [main] testng.multiplier = 1.0 [testng] [2024-10-08 06:28:18,737] [main] testng.in-memory = false [testng] [2024-10-08 06:28:18,737] [main] testng.allow-missing = false [testng] [2024-10-08 06:28:18,737] [main] user.language = en [testng] [2024-10-08 06:28:18,737] [main] user.country = ${user.country} [testng] [2024-10-08 06:28:18,737] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 06:28:19,630] [main] ---------------------------------------- [testng] [2024-10-08 06:28:19,630] [main] Total files: 14 [testng] [2024-10-08 06:28:19,630] [main] Scan time: 0.892 s (63 ms/file) [testng] [2024-10-08 06:28:19,630] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 06:28:35,166] [pool-1-thread-1] Initializing /data/samples/BigTIFFSubIFD8.tif: [testng] 06:28:35,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:28:35,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:35,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-28-35.log] [testng] 06:28:35,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42da55 - End of configuration. [testng] [2024-10-08 06:28:35,410] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: [testng] 06:28:35,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:28:35,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:35,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-28-35.log] [testng] 06:28:35,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62783d88 - End of configuration. [testng] [2024-10-08 06:28:35,648] [pool-1-thread-11] Initializing /data/samples/BigTIFFLong8.tif: [testng] 06:28:35,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:28:35,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:35,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-28-35.log] [testng] 06:28:35,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c03ec2d - End of configuration. [testng] [2024-10-08 06:28:35,857] [pool-1-thread-10] Initializing /data/colin/7S59P8I1_F00000012.btf: [testng] 06:28:35,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:28:35,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:35,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-28-35.log] [testng] 06:28:35,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f7e8c8e - End of configuration. [testng] [2024-10-08 06:28:37,883] [pool-1-thread-9] Initializing /data/samples/Classic.tif: [testng] 06:28:37,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:28:37,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:37,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-28-37.log] [testng] 06:28:37,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7057ca89 - End of configuration. [testng] [2024-10-08 06:28:38,050] [pool-1-thread-8] Initializing /data/carlsen/Olympics8-raw.tif: [testng] 06:28:38,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:28:38,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-28-38.log] [testng] 06:28:38,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8fb544 - End of configuration. [testng] [2024-10-08 06:28:38,262] [pool-1-thread-7] Initializing /data/carlsen/Olympics8.tif: [testng] 06:28:38,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:28:38,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-28-38.log] [testng] 06:28:38,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125b4a2a - End of configuration. [testng] [2024-10-08 06:28:38,393] [pool-1-thread-6] Initializing /data/samples/BigTIFF.tif: [testng] 06:28:38,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:28:38,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-28-38.log] [testng] 06:28:38,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b485849 - End of configuration. [testng] [2024-10-08 06:28:38,594] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8Tiles.tif: [testng] 06:28:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:28:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-28-38.log] [testng] 06:28:38,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4411dd26 - End of configuration. [testng] [2024-10-08 06:28:38,717] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-lzw.tif: [testng] 06:28:38,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:28:38,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-28-38.log] [testng] 06:28:38,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b2edd0 - End of configuration. [testng] [2024-10-08 06:28:38,878] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorola.tif: [testng] 06:28:38,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:28:38,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:38,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-28-38.log] [testng] 06:28:38,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b40a0e1 - End of configuration. [testng] [2024-10-08 06:28:39,010] [pool-1-thread-2] Initializing /data/samples/BigTIFFLong.tif: [testng] 06:28:39,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:28:39,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:39,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-28-39.log] [testng] 06:28:39,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f50db82 - End of configuration. [testng] [2024-10-08 06:28:43,634] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD4.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS