Started by upstream project "BIOFORMATS-test-repo" build number 214
originally caused by:
 Started by upstream project "Trigger" build number 241
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10838149016975733401.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33929_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 08:43:18,480 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 08:43:18,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 08:43:18,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:43:18,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:43:18,483 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 08:43:18,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 08:43:18,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 08:43:18,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:43:18,485 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:43:18,485 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 08:43:18,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 08:43:18,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 08:43:18,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 08:43:18,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 08:43:18,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 08:43:18,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 08:43:18,702 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 08:43:18,702 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 08:43:18,702 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 08:43:18,702 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 08:43:18,702 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 08:43:18,703 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 08:43:18,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-08 08:43:18,712] [main] java.version = 11.0.16
   [testng] 08:43:18,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 08:43:18,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:18,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_08-43-18.log]
   [testng] 08:43:18,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-08 08:43:18,763] [main] testng.directory = /data
   [testng] [2024-10-08 08:43:18,763] [main] testng.configDirectory = /config
   [testng] [2024-10-08 08:43:18,773] [main] testng.multiplier = 1.0
   [testng] [2024-10-08 08:43:18,774] [main] testng.in-memory = false
   [testng] [2024-10-08 08:43:18,775] [main] testng.allow-missing = false
   [testng] [2024-10-08 08:43:18,775] [main] user.language = en
   [testng] [2024-10-08 08:43:18,775] [main] user.country = ${user.country}
   [testng] [2024-10-08 08:43:18,775] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-08 08:43:19,494] [main] ----------------------------------------
   [testng] [2024-10-08 08:43:19,494] [main] Total files: 36
   [testng] [2024-10-08 08:43:19,494] [main] Scan time: 0.719 s (19 ms/file)
   [testng] [2024-10-08 08:43:19,495] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 35 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-08 08:43:20,962] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx: 
   [testng] 08:43:20,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 08:43:20,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:20,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_08-43-20.log]
   [testng] 08:43:20,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f0d6af - End of configuration.
   [testng] [2024-10-08 08:43:21,019] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: 
   [testng] 08:43:21,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 08:43:21,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_08-43-21.log]
   [testng] 08:43:21,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42453bc1 - End of configuration.
   [testng] [2024-10-08 08:43:21,032] [pool-1-thread-11] Initializing /data/generated/mri-stack19.pcx: 
   [testng] 08:43:21,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 08:43:21,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_08-43-21.log]
   [testng] 08:43:21,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3850478f - End of configuration.
   [testng] [2024-10-08 08:43:21,043] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: 
   [testng] 08:43:21,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 08:43:21,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_08-43-21.log]
   [testng] 08:43:21,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7126edf0 - End of configuration.
   [testng] [2024-10-08 08:43:21,054] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: 
   [testng] 08:43:21,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 08:43:21,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_08-43-21.log]
   [testng] 08:43:21,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c99b7a - End of configuration.
   [testng] [2024-10-08 08:43:21,066] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: 
   [testng] 08:43:21,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 08:43:21,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_08-43-21.log]
   [testng] 08:43:21,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fddb623 - End of configuration.
   [testng] [2024-10-08 08:43:21,077] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: 
   [testng] 08:43:21,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 08:43:21,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_08-43-21.log]
   [testng] 08:43:21,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6618b1e0 - End of configuration.
   [testng] [2024-10-08 08:43:21,087] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: 
   [testng] 08:43:21,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 08:43:21,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_08-43-21.log]
   [testng] 08:43:21,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d6fc1b - End of configuration.
   [testng] [2024-10-08 08:43:21,098] [pool-1-thread-5] Initializing /data/generated/mri-stack17.pcx: 
   [testng] 08:43:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 08:43:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_08-43-21.log]
   [testng] 08:43:21,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203338c8 - End of configuration.
   [testng] [2024-10-08 08:43:21,108] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: 
   [testng] 08:43:21,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 08:43:21,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_08-43-21.log]
   [testng] 08:43:21,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13222ddf - End of configuration.
   [testng] [2024-10-08 08:43:21,119] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: 
   [testng] 08:43:21,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 08:43:21,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_08-43-21.log]
   [testng] 08:43:21,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1dddc9 - End of configuration.
   [testng] [2024-10-08 08:43:21,129] [pool-1-thread-2] Initializing /data/generated/mri-stack13.pcx: 
   [testng] 08:43:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 08:43:21,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:43:21,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_08-43-21.log]
   [testng] 08:43:21,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e6526b - End of configuration.
   [testng] [2024-10-08 08:43:23,862] [pool-1-thread-1] Initializing /data/generated/mri-stack21.pcx: 
   [testng] [2024-10-08 08:43:23,873] [pool-1-thread-4] Initializing /data/generated/mri-stack0.pcx: 
   [testng] [2024-10-08 08:43:23,881] [pool-1-thread-8] Initializing /data/generated/mri-stack1.pcx: 
   [testng] [2024-10-08 08:43:23,890] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: 
   [testng] [2024-10-08 08:43:23,905] [pool-1-thread-5] Initializing /data/generated/mri-stack22.pcx: 
   [testng] [2024-10-08 08:43:23,914] [pool-1-thread-10] Initializing /data/generated/mri-stack10.pcx: 
   [testng] [2024-10-08 08:43:23,923] [pool-1-thread-6] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: 
   [testng] [2024-10-08 08:43:23,936] [pool-1-thread-3] Initializing /data/josh/Screenshots/leica-lif.pcx: 
   [testng] [2024-10-08 08:43:23,946] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx: 
   [testng] [2024-10-08 08:43:23,955] [pool-1-thread-9] Initializing /data/generated/mri-stack18.pcx: 
   [testng] [2024-10-08 08:43:23,964] [pool-1-thread-7] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: 
   [testng] [2024-10-08 08:43:23,975] [pool-1-thread-11] Initializing /data/josh/Screenshots/nd2 color.pcx: 
   [testng] [2024-10-08 08:43:24,827] [pool-1-thread-10] Initializing /data/generated/mri-stack8.pcx: 
   [testng] [2024-10-08 08:43:24,842] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: 
   [testng] [2024-10-08 08:43:24,852] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: 
   [testng] [2024-10-08 08:43:24,909] [pool-1-thread-4] Initializing /data/generated/mri-stack3.pcx: 
   [testng] [2024-10-08 08:43:24,978] [pool-1-thread-1] Initializing /data/generated/mri-stack2.pcx: 
   [testng] [2024-10-08 08:43:25,012] [pool-1-thread-5] Initializing /data/josh/Screenshots/epscolor.pcx: 
   [testng] [2024-10-08 08:43:25,062] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx: 
   [testng] [2024-10-08 08:43:25,396] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx: 
   [testng] [2024-10-08 08:43:25,550] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: 
   [testng] [2024-10-08 08:43:25,562] [pool-1-thread-12] Initializing /data/josh/Screenshots/deltavision.pcx: 
   [testng] [2024-10-08 08:43:25,575] [pool-1-thread-9] Initializing /data/generated/mri-stack23.pcx: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1855, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS