Started by upstream project "BIOFORMATS-test-repo" build number 214
originally caused by:
Started by upstream project "Trigger" build number 241
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14372457304853994944.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33943_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 08:44:40,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:44:40,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 08:44:40,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:44:40,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:44:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:44:40,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:44:40,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:44:40,536 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:44:40,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:44:40,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:44:40,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:44:40,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:44:40,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:44:40,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:44:40,744 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:44:40,744 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:44:40,744 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:44:40,745 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:44:40,745 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 08:44:40,746 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 08:44:40,746 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-08 08:44:40,754] [main] java.version = 11.0.16
[testng] 08:44:40,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:44:40,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:40,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_08-44-40.log]
[testng] 08:44:40,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-08 08:44:40,802] [main] testng.directory = /data
[testng] [2024-10-08 08:44:40,802] [main] testng.configDirectory = /config
[testng] [2024-10-08 08:44:40,813] [main] testng.multiplier = 1.0
[testng] [2024-10-08 08:44:40,814] [main] testng.in-memory = false
[testng] [2024-10-08 08:44:40,814] [main] testng.allow-missing = false
[testng] [2024-10-08 08:44:40,814] [main] user.language = en
[testng] [2024-10-08 08:44:40,814] [main] user.country = ${user.country}
[testng] [2024-10-08 08:44:40,815] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-08 08:44:41,368] [main] ----------------------------------------
[testng] [2024-10-08 08:44:41,368] [main] Total files: 21
[testng] [2024-10-08 08:44:41,368] [main] Scan time: 0.553 s (26 ms/file)
[testng] [2024-10-08 08:44:41,368] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-08 08:44:45,400] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim:
[testng] 08:44:45,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:44:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:45,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_08-44-45.log]
[testng] 08:44:45,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6f145a - End of configuration.
[testng] [2024-10-08 08:44:45,682] [pool-1-thread-12] Initializing /data/venu/Kontrolle0012.lim:
[testng] 08:44:45,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:44:45,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:45,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_08-44-45.log]
[testng] 08:44:45,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c0a97e - End of configuration.
[testng] [2024-10-08 08:44:45,929] [pool-1-thread-11] Initializing /data/venu/Kontrolle0007.lim:
[testng] 08:44:45,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:44:45,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:45,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_08-44-45.log]
[testng] 08:44:45,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ac3335 - End of configuration.
[testng] [2024-10-08 08:44:46,174] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim:
[testng] 08:44:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:44:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:46,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_08-44-46.log]
[testng] 08:44:46,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f780db - End of configuration.
[testng] [2024-10-08 08:44:46,402] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim:
[testng] 08:44:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:44:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:46,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_08-44-46.log]
[testng] 08:44:46,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a967501 - End of configuration.
[testng] [2024-10-08 08:44:46,653] [pool-1-thread-8] Initializing /data/venu/Kontrolle0020.lim:
[testng] 08:44:46,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:44:46,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:46,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_08-44-46.log]
[testng] 08:44:46,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6d7f0d - End of configuration.
[testng] [2024-10-08 08:44:46,893] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim:
[testng] 08:44:46,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:44:46,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:46,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_08-44-46.log]
[testng] 08:44:46,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42852aca - End of configuration.
[testng] [2024-10-08 08:44:47,131] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim:
[testng] 08:44:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:44:47,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:47,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_08-44-47.log]
[testng] 08:44:47,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration.
[testng] [2024-10-08 08:44:47,374] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim:
[testng] 08:44:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:44:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:47,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_08-44-47.log]
[testng] 08:44:47,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653f736d - End of configuration.
[testng] [2024-10-08 08:44:47,624] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim:
[testng] 08:44:47,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:44:47,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:47,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_08-44-47.log]
[testng] 08:44:47,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration.
[testng] [2024-10-08 08:44:47,842] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim:
[testng] 08:44:47,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:44:47,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:47,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_08-44-47.log]
[testng] 08:44:47,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6603c86e - End of configuration.
[testng] [2024-10-08 08:44:48,100] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim:
[testng] 08:44:48,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:44:48,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:44:48,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_08-44-48.log]
[testng] 08:44:48,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a30aa1 - End of configuration.
[testng] [2024-10-08 08:44:52,929] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-10-08 08:44:53,214] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-10-08 08:44:53,491] [pool-1-thread-11] Initializing /data/venu/Kontrolle0018.lim:
[testng] [2024-10-08 08:44:53,771] [pool-1-thread-12] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-10-08 08:44:54,030] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-10-08 08:44:54,313] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-10-08 08:44:54,570] [pool-1-thread-4] Initializing /data/venu/Kontrolle0005.lim:
[testng] [2024-10-08 08:44:54,844] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 20 seconds
Finished: SUCCESS