Started by upstream project "BIOFORMATS-test-repo" build number 214
originally caused by:
Started by upstream project "Trigger" build number 241
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2903837579258478145.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34014_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 10:21:51,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 10:21:51,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 10:21:51,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:21:51,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:21:51,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 10:21:51,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 10:21:51,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 10:21:51,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:21:51,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:21:51,843 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 10:21:51,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 10:21:51,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 10:21:52,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 10:21:52,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 10:21:52,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 10:21:52,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 10:21:52,038 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 10:21:52,038 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 10:21:52,038 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 10:21:52,038 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 10:21:52,038 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 10:21:52,039 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 10:21:52,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-08 10:21:52,048] [main] java.version = 11.0.16
[testng] 10:21:52,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 10:21:52,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:21:52,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_10-21-52.log]
[testng] 10:21:52,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-08 10:21:52,096] [main] testng.directory = /data
[testng] [2024-10-08 10:21:52,096] [main] testng.configDirectory = /config
[testng] [2024-10-08 10:21:52,105] [main] testng.multiplier = 1.0
[testng] [2024-10-08 10:21:52,106] [main] testng.in-memory = false
[testng] [2024-10-08 10:21:52,106] [main] testng.allow-missing = false
[testng] [2024-10-08 10:21:52,106] [main] user.language = en
[testng] [2024-10-08 10:21:52,107] [main] user.country = ${user.country}
[testng] [2024-10-08 10:21:52,107] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-08 10:21:58,235] [main] ----------------------------------------
[testng] [2024-10-08 10:21:58,235] [main] Total files: 40
[testng] [2024-10-08 10:21:58,235] [main] Scan time: 6.128 s (153 ms/file)
[testng] [2024-10-08 10:21:58,235] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-08 10:23:04,108] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi:
[testng] 10:23:04,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 10:23:04,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:04,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_10-23-04.log]
[testng] 10:23:04,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4855b257 - End of configuration.
[testng] [2024-10-08 10:23:04,649] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 10:23:04,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 10:23:04,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:04,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_10-23-04.log]
[testng] 10:23:04,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a535ae8 - End of configuration.
[testng] [2024-10-08 10:23:05,154] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] 10:23:05,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 10:23:05,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:05,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_10-23-05.log]
[testng] 10:23:05,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ac0cfe6 - End of configuration.
[testng] [2024-10-08 10:23:05,635] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] 10:23:05,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 10:23:05,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:05,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_10-23-05.log]
[testng] 10:23:05,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b3cd0f - End of configuration.
[testng] [2024-10-08 10:23:06,190] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi:
[testng] 10:23:06,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 10:23:06,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:06,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_10-23-06.log]
[testng] 10:23:06,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438a9e2e - End of configuration.
[testng] [2024-10-08 10:23:06,621] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi:
[testng] 10:23:06,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 10:23:06,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:06,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_10-23-06.log]
[testng] 10:23:06,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ca4600 - End of configuration.
[testng] [2024-10-08 10:23:08,079] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 10:23:08,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 10:23:08,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:08,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_10-23-08.log]
[testng] 10:23:08,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d5c48eb - End of configuration.
[testng] [2024-10-08 10:23:08,781] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] 10:23:08,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 10:23:08,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:08,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_10-23-08.log]
[testng] 10:23:08,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f8de784 - End of configuration.
[testng] [2024-10-08 10:23:09,145] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 10:23:09,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 10:23:09,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:09,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_10-23-09.log]
[testng] 10:23:09,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@231bf243 - End of configuration.
[testng] [2024-10-08 10:23:10,701] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] 10:23:10,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 10:23:10,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:10,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_10-23-10.log]
[testng] 10:23:10,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1efbd0dc - End of configuration.
[testng] [2024-10-08 10:23:11,410] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 10:23:11,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 10:23:11,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:11,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_10-23-11.log]
[testng] 10:23:11,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aade661 - End of configuration.
[testng] [2024-10-08 10:23:12,922] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] 10:23:12,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 10:23:12,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:23:12,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_10-23-12.log]
[testng] 10:23:12,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a3c09b - End of configuration.
[testng] [2024-10-08 10:23:21,871] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-10-08 10:23:22,903] [pool-1-thread-3] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2024-10-08 10:23:24,081] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-10-08 10:23:24,962] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2024-10-08 10:23:26,536] [pool-1-thread-2] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2024-10-08 10:23:27,406] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-10-08 10:23:28,553] [pool-1-thread-10] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2024-10-08 10:23:29,494] [pool-1-thread-9] Initializing /data/kurt/63x_6um.avi:
[testng] [2024-10-08 10:23:30,729] [pool-1-thread-6] Initializing /data/chris/APZ04_009.avi:
[testng] [2024-10-08 10:23:36,293] [pool-1-thread-8] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] [2024-10-08 10:23:37,351] [pool-1-thread-7] Initializing /data/william/worm.avi:
[testng] [2024-10-08 10:23:38,799] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2024-10-08 10:23:48,853] [pool-1-thread-7] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2024-10-08 10:23:51,665] [pool-1-thread-5] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2024-10-08 10:23:53,299] [pool-1-thread-1] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-10-08 10:23:54,030] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-10-08 10:23:54,750] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] [2024-10-08 10:23:55,511] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-10-08 10:24:01,122] [pool-1-thread-4] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2024-10-08 10:24:01,508] [pool-1-thread-2] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-10-08 10:24:02,829] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-10-08 10:24:04,013] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-10-08 10:24:04,898] [pool-1-thread-3] Initializing /data/ascb/TIRF.avi:
[testng] [2024-10-08 10:24:15,322] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-10-08 10:24:19,429] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi:
[testng] [2024-10-08 10:24:20,745] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 48 seconds
Finished: SUCCESS