Started by upstream project "BIOFORMATS-test-repo" build number 214
originally caused by:
Started by upstream project "Trigger" build number 241
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2612442770019092479.sh
+ '[' ventana = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34029_merge_ci -v /uod/idr/repos/curated/ventana:/data -v /uod/idr-scratch/merge-ci/curated/ventana:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 19:54:58,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 19:54:58,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 19:54:58,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 19:54:58,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 19:54:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 19:54:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 19:54:58,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 19:54:58,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 19:54:58,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 19:54:58,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 19:54:58,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 19:54:58,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 19:54:58,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 19:54:58,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 19:54:58,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 19:54:58,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 19:54:58,384 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 19:54:58,384 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 19:54:58,384 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 19:54:58,385 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 19:54:58,385 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 19:54:58,386 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 19:54:58,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-08 19:54:58,394] [main] java.version = 11.0.16
[testng] 19:54:58,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 19:54:58,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:54:58,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_19-54-58.log]
[testng] 19:54:58,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-08 19:54:58,439] [main] testng.directory = /data
[testng] [2024-10-08 19:54:58,440] [main] testng.configDirectory = /config
[testng] [2024-10-08 19:54:58,449] [main] testng.multiplier = 1.0
[testng] [2024-10-08 19:54:58,450] [main] testng.in-memory = false
[testng] [2024-10-08 19:54:58,450] [main] testng.allow-missing = false
[testng] [2024-10-08 19:54:58,450] [main] user.language = en
[testng] [2024-10-08 19:54:58,450] [main] user.country = ${user.country}
[testng] [2024-10-08 19:54:58,450] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-08 19:55:38,121] [main] ----------------------------------------
[testng] [2024-10-08 19:55:38,121] [main] Total files: 10
[testng] [2024-10-08 19:55:38,121] [main] Scan time: 39.67 s (3967 ms/file)
[testng] [2024-10-08 19:55:38,122] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 10 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-08 19:57:51,090] [pool-1-thread-1] Initializing /data/qa-11086/CASO_2_20X_HD_4_16.bif:
[testng] 19:57:51,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 19:57:51,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:57:51,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_19-57-51.log]
[testng] 19:57:51,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@316797b0 - End of configuration.
[testng] [2024-10-08 19:57:57,738] [pool-1-thread-10] Initializing /data/public/openslide/OS-1.bif:
[testng] 19:57:57,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 19:57:57,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:57:57,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_19-57-57.log]
[testng] 19:57:57,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ad6434 - End of configuration.
[testng] [2024-10-08 19:58:07,328] [pool-1-thread-9] Initializing /data/qa-27763/QuPath Bio-Formats sample file.tif:
[testng] 19:58:07,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 19:58:07,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:07,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_19-58-07.log]
[testng] 19:58:07,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b24fa5d - End of configuration.
[testng] [2024-10-08 19:58:12,148] [pool-1-thread-8] Initializing /data/gh-3927/imagesc-75221/A-180000004-01-M-001.bif:
[testng] 19:58:12,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 19:58:12,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:12,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_19-58-12.log]
[testng] 19:58:12,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4697ea3b - End of configuration.
[testng] [2024-10-08 19:58:19,382] [pool-1-thread-7] Initializing /data/gh-3927/imagesc-75221/B-210004684-01-A-001.bif:
[testng] 19:58:19,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 19:58:19,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:19,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_19-58-19.log]
[testng] 19:58:19,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b55955f - End of configuration.
[testng] [2024-10-08 19:58:24,950] [pool-1-thread-6] Initializing /data/qa-11086/2.bif:
[testng] 19:58:24,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 19:58:24,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:24,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_19-58-24.log]
[testng] 19:58:24,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14f2953c - End of configuration.
[testng] [2024-10-08 19:58:37,531] [pool-1-thread-5] Initializing /data/gh-3927/imagesc-75002/ome-bioformats-bug.bif:
[testng] 19:58:37,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 19:58:37,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:37,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_19-58-37.log]
[testng] 19:58:37,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f5b0988 - End of configuration.
[testng] [2024-10-08 19:58:40,710] [pool-1-thread-4] Initializing /data/public/openslide/OS-2.bif:
[testng] 19:58:40,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 19:58:40,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:40,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_19-58-40.log]
[testng] 19:58:40,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e3e2091 - End of configuration.
[testng] [2024-10-08 19:58:48,489] [pool-1-thread-3] Initializing /data/gh3570/UMFZ-_175_06142018091319AM.bif:
[testng] 19:58:48,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 19:58:48,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:48,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_19-58-48.log]
[testng] 19:58:48,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73eeeee3 - End of configuration.
[testng] [2024-10-08 19:58:56,525] [pool-1-thread-2] Initializing /data/qa-11086/3.bif:
[testng] 19:58:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 19:58:56,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 19:58:56,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_19-58-56.log]
[testng] 19:58:56,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126b0086 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 530, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 26 seconds
Finished: SUCCESS