Started by upstream project "BIOFORMATS-test-repo" build number 215
originally caused by:
Started by upstream project "Trigger" build number 242
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2636648216362226390.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34050_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:34,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:34,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:21:34,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:34,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:34,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:34,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:34,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:34,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:34,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:34,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:34,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:34,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:34,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:34,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:34,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:34,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:34,746 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:34,746 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:34,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:34,746 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:34,747 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:21:34,748 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:21:34,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-09 01:21:34,756] [main] java.version = 17.0.2
[testng] 01:21:34,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:34,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:34,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_01-21-34.log]
[testng] 01:21:34,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-09 01:21:34,800] [main] testng.directory = /data
[testng] [2024-10-09 01:21:34,800] [main] testng.configDirectory = /config
[testng] [2024-10-09 01:21:34,808] [main] testng.multiplier = 1.0
[testng] [2024-10-09 01:21:34,808] [main] testng.in-memory = false
[testng] [2024-10-09 01:21:34,808] [main] testng.allow-missing = false
[testng] [2024-10-09 01:21:34,808] [main] user.language = en
[testng] [2024-10-09 01:21:34,809] [main] user.country = ${user.country}
[testng] [2024-10-09 01:21:34,809] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-09 01:22:03,863] [main] ----------------------------------------
[testng] [2024-10-09 01:22:03,864] [main] Total files: 315
[testng] [2024-10-09 01:22:03,864] [main] Scan time: 29.054 s (92 ms/file)
[testng] [2024-10-09 01:22:03,864] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-09 01:32:46,194] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] 01:32:46,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:32:46,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:46,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_01-32-46.log]
[testng] 01:32:46,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@580da0e7 - End of configuration.
[testng] [2024-10-09 01:32:46,601] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] 01:32:46,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:32:46,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:46,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_01-32-46.log]
[testng] 01:32:46,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c56a16 - End of configuration.
[testng] [2024-10-09 01:32:47,129] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir:
[testng] 01:32:47,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:32:47,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:47,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_01-32-47.log]
[testng] 01:32:47,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14946669 - End of configuration.
[testng] [2024-10-09 01:32:47,787] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] 01:32:47,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:32:47,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:47,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_01-32-47.log]
[testng] 01:32:47,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f471b71 - End of configuration.
[testng] [2024-10-09 01:32:48,282] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] 01:32:48,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:32:48,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:48,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_01-32-48.log]
[testng] 01:32:48,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52b618aa - End of configuration.
[testng] [2024-10-09 01:32:49,454] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] 01:32:49,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:32:49,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:49,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_01-32-49.log]
[testng] 01:32:49,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e63179f - End of configuration.
[testng] [2024-10-09 01:32:50,306] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] 01:32:50,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:32:50,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:50,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_01-32-50.log]
[testng] 01:32:50,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebfbecd - End of configuration.
[testng] [2024-10-09 01:32:50,802] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] 01:32:50,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:32:50,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:50,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_01-32-50.log]
[testng] 01:32:50,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358fc867 - End of configuration.
[testng] [2024-10-09 01:32:51,485] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] 01:32:51,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:32:51,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:51,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_01-32-51.log]
[testng] 01:32:51,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3b94c - End of configuration.
[testng] [2024-10-09 01:32:52,138] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] 01:32:52,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:32:52,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:52,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_01-32-52.log]
[testng] 01:32:52,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@84d53c4 - End of configuration.
[testng] [2024-10-09 01:32:52,679] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] 01:32:52,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:32:52,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:52,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_01-32-52.log]
[testng] 01:32:52,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@529ce49d - End of configuration.
[testng] [2024-10-09 01:32:53,151] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] 01:32:53,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:32:53,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:53,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_01-32-53.log]
[testng] 01:32:53,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79c13ed6 - End of configuration.
[testng] [2024-10-09 01:33:20,662] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-09 01:33:21,067] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-09 01:33:21,971] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-09 01:33:22,663] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-09 01:33:23,453] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-09 01:33:24,158] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-09 01:33:24,951] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-09 01:33:25,463] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-09 01:33:25,840] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-09 01:33:30,671] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-09 01:33:31,890] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-09 01:33:33,306] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-09 01:33:34,568] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-09 01:33:34,874] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-09 01:33:35,546] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-09 01:33:36,167] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-09 01:33:36,998] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-09 01:33:37,329] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-09 01:33:38,411] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-09 01:33:39,607] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-09 01:33:40,842] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-09 01:33:42,285] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-09 01:33:43,741] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-09 01:33:44,263] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-09 01:33:44,837] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-09 01:33:45,315] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-09 01:33:45,815] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-09 01:33:47,072] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-09 01:33:50,029] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-09 01:33:50,764] [pool-1-thread-4] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-09 01:33:51,418] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-09 01:33:52,038] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-09 01:33:53,099] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-09 01:33:54,011] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-09 01:33:54,676] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-09 01:33:55,078] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-09 01:33:55,931] [pool-1-thread-1] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-09 01:33:59,454] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-09 01:34:00,376] [pool-1-thread-6] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-09 01:34:01,075] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-09 01:34:02,184] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-09 01:34:02,861] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-09 01:34:03,992] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-09 01:34:05,010] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-09 01:34:06,302] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-09 01:34:09,869] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-09 01:34:10,454] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-09 01:34:11,066] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-09 01:34:11,923] [pool-1-thread-9] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-09 01:34:12,439] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-09 01:34:13,763] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-09 01:34:14,380] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-09 01:34:15,031] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-09 01:34:17,064] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-09 01:34:18,540] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-09 01:34:19,081] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-09 01:34:19,952] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-09 01:34:21,969] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-09 01:34:22,411] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-09 01:34:23,421] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-09 01:34:24,191] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-09 01:34:24,561] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-09 01:34:26,967] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-09 01:34:27,926] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-09 01:34:29,527] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-09 01:34:31,254] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-09 01:34:31,751] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-09 01:34:32,763] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-09 01:34:33,188] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-09 01:34:33,541] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-09 01:34:36,426] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-09 01:34:37,103] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-09 01:34:38,188] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-09 01:34:38,837] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-09 01:34:42,866] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-09 01:34:43,341] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-09 01:34:44,390] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-09 01:34:45,640] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-09 01:34:46,662] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-09 01:34:47,511] [pool-1-thread-3] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-09 01:34:48,043] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-09 01:34:51,290] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-09 01:34:55,776] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-09 01:34:57,243] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-09 01:34:57,905] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-09 01:34:58,545] [pool-1-thread-6] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-09 01:34:59,264] [pool-1-thread-10] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-09 01:34:59,933] [pool-1-thread-1] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-09 01:35:03,210] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-09 01:35:04,438] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-09 01:35:06,181] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-09 01:35:09,852] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-09 01:35:12,047] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-09 01:35:16,125] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-09 01:35:17,042] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-09 01:35:19,740] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-09 01:35:22,082] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-09 01:35:23,429] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-09 01:35:24,057] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-09 01:35:25,633] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-09 01:35:30,133] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-09 01:35:30,651] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-09 01:35:31,285] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-09 01:35:31,906] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-10-09 01:35:34,245] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-09 01:35:34,885] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-09 01:36:26,700] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-09 01:36:27,256] [pool-1-thread-12] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-09 01:36:27,621] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-09 01:36:30,244] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-09 01:36:31,202] [pool-1-thread-10] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-09 01:36:33,961] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-09 01:36:35,426] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-10-09 01:36:36,506] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-09 01:36:38,272] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-09 01:36:39,737] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-09 01:36:40,802] [pool-1-thread-4] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-09 01:37:00,930] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-09 01:37:02,571] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-09 01:37:03,767] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-10-09 01:37:05,290] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-09 01:37:07,496] [pool-1-thread-5] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-09 01:37:10,035] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-09 01:37:11,276] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-09 01:37:15,679] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-09 01:37:16,231] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-09 01:37:16,772] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-09 01:37:20,007] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-09 01:37:21,546] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-09 01:37:22,179] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-09 01:37:23,345] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-09 01:37:25,970] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-09 01:37:27,190] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-09 01:37:27,962] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-10-09 01:37:28,702] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-09 01:37:30,893] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-09 01:37:34,300] [pool-1-thread-11] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-09 01:37:36,343] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-09 01:37:37,539] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-09 01:37:38,763] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-09 01:37:44,069] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-09 01:37:44,424] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-09 01:37:45,006] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-09 01:37:45,448] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-09 01:37:49,462] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-09 01:37:50,213] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-09 01:37:51,053] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-09 01:37:58,132] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-09 01:37:59,734] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-09 01:38:00,326] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-09 01:38:01,907] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-09 01:38:02,359] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-09 01:38:06,221] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-09 01:38:07,175] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-09 01:38:07,798] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-09 01:38:11,941] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-09 01:38:15,590] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-09 01:38:47,927] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-09 01:38:52,915] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-09 01:38:53,448] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-09 01:38:58,712] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-09 01:38:59,289] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-09 01:39:05,333] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-09 01:39:07,648] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-09 01:39:12,259] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-09 01:39:13,423] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-09 01:39:15,325] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-09 01:39:17,073] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-09 01:39:21,849] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-09 01:39:23,878] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-09 01:39:25,938] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-09 01:39:27,925] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-09 01:39:31,244] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-09 01:39:33,771] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-09 01:39:39,902] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-09 01:39:44,764] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-09 01:39:46,024] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-09 01:39:56,638] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-09 01:40:02,157] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-10-09 01:40:04,572] [pool-1-thread-4] Initializing /data/qa-17335/1.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 minutes 21 seconds
Finished: SUCCESS