Started by upstream project "BIOFORMATS-test-repo" build number 215
originally caused by:
 Started by upstream project "Trigger" build number 242
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15088445760710101662.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34106_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:18:39,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:18:39,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 02:18:39,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:18:39,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:18:39,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:18:39,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:18:39,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:18:39,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:18:39,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:18:39,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:18:39,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:18:39,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:18:39,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:18:39,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:18:39,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:18:39,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:18:39,603 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:18:39,604 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:18:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:18:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:18:39,604 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 02:18:39,605 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 02:18:39,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-09 02:18:39,614] [main] java.version = 17.0.2
   [testng] 02:18:39,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:18:39,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:18:39,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_02-18-39.log]
   [testng] 02:18:39,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-09 02:18:39,662] [main] testng.directory = /data
   [testng] [2024-10-09 02:18:39,662] [main] testng.configDirectory = /config
   [testng] [2024-10-09 02:18:39,671] [main] testng.multiplier = 1.0
   [testng] [2024-10-09 02:18:39,672] [main] testng.in-memory = false
   [testng] [2024-10-09 02:18:39,672] [main] testng.allow-missing = false
   [testng] [2024-10-09 02:18:39,672] [main] user.language = en
   [testng] [2024-10-09 02:18:39,672] [main] user.country = ${user.country}
   [testng] [2024-10-09 02:18:39,672] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-09 02:18:58,021] [main] ----------------------------------------
   [testng] [2024-10-09 02:18:58,021] [main] Total files: 25
   [testng] [2024-10-09 02:18:58,021] [main] Scan time: 18.349 s (733 ms/file)
   [testng] [2024-10-09 02:18:58,021] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-09 02:19:21,927] [pool-1-thread-1] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 02:19:21,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:19:21,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:21,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_02-19-21.log]
   [testng] 02:19:21,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@163b947 - End of configuration.
   [testng] [2024-10-09 02:19:22,296] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 02:19:22,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:19:22,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:22,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_02-19-22.log]
   [testng] 02:19:22,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391287af - End of configuration.
   [testng] [2024-10-09 02:19:22,372] [pool-1-thread-11] Initializing /data/pang/unproc-auto: 
   [testng] 02:19:22,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:19:22,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:22,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_02-19-22.log]
   [testng] 02:19:22,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a2db10 - End of configuration.
   [testng] [2024-10-09 02:19:22,812] [pool-1-thread-10] Initializing /data/imagic/13008.dm2: 
   [testng] 02:19:22,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:19:22,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:22,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_02-19-22.log]
   [testng] 02:19:22,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326cff3e - End of configuration.
   [testng] [2024-10-09 02:19:23,183] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 02:19:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:19:23,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:23,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_02-19-23.log]
   [testng] 02:19:23,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42af7fd9 - End of configuration.
   [testng] [2024-10-09 02:19:23,243] [pool-1-thread-8] Initializing /data/pang/10500x-o4: 
   [testng] 02:19:23,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:19:23,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:23,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_02-19-23.log]
   [testng] 02:19:23,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64fc35e0 - End of configuration.
   [testng] [2024-10-09 02:19:23,635] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 02:19:23,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:19:23,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:23,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_02-19-23.log]
   [testng] 02:19:23,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ccef99 - End of configuration.
   [testng] [2024-10-09 02:19:23,696] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2: 
   [testng] 02:19:23,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:19:23,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:23,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_02-19-23.log]
   [testng] 02:19:23,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59cdcac8 - End of configuration.
   [testng] [2024-10-09 02:19:24,052] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 02:19:24,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:19:24,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:24,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_02-19-24.log]
   [testng] 02:19:24,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26469cc2 - End of configuration.
   [testng] [2024-10-09 02:19:24,396] [pool-1-thread-4] Initializing /data/pang/grating025k.dm2: 
   [testng] 02:19:24,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:19:24,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:24,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_02-19-24.log]
   [testng] 02:19:24,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ad89ef - End of configuration.
   [testng] [2024-10-09 02:19:24,786] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 02:19:24,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:19:24,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:24,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_02-19-24.log]
   [testng] 02:19:24,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b0fa79 - End of configuration.
   [testng] [2024-10-09 02:19:25,149] [pool-1-thread-2] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] 02:19:25,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:19:25,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:25,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_02-19-25.log]
   [testng] 02:19:25,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e2ac77 - End of configuration.
   [testng] [2024-10-09 02:19:28,905] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] [2024-10-09 02:19:28,994] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] [2024-10-09 02:19:29,096] [pool-1-thread-12] Initializing /data/pang/signed: 
   [testng] [2024-10-09 02:19:29,916] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] [2024-10-09 02:19:30,391] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] [2024-10-09 02:19:30,580] [pool-1-thread-10] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 59 seconds
Finished: SUCCESS