Started by upstream project "BIOFORMATS-test-repo" build number 27
originally caused by:
Started by upstream project "Trigger" build number 30
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3804783224690684494.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3417_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:18,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:18,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:21:18,860 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:18,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:18,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:18,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:18,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:18,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:18,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:18,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:18,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:18,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:19,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:19,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:19,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:19,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:19,125 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:19,126 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:19,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:19,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:19,126 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:21:19,127 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:21:19,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-08 01:21:19,137] [main] java.version = 1.8.0_342
[testng] 01:21:19,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:19,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:19,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_01-21-19.log]
[testng] 01:21:19,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-08 01:21:19,187] [main] testng.directory = /data
[testng] [2024-04-08 01:21:19,187] [main] testng.configDirectory = /config
[testng] [2024-04-08 01:21:19,198] [main] testng.multiplier = 1.0
[testng] [2024-04-08 01:21:19,199] [main] testng.in-memory = false
[testng] [2024-04-08 01:21:19,199] [main] testng.allow-missing = false
[testng] [2024-04-08 01:21:19,199] [main] user.language = fr
[testng] [2024-04-08 01:21:19,199] [main] user.country = FR
[testng] [2024-04-08 01:21:19,199] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-08 01:21:19,763] [main] ----------------------------------------
[testng] [2024-04-08 01:21:19,763] [main] Total files: 36
[testng] [2024-04-08 01:21:19,763] [main] Scan time: 0.564 s (15 ms/file)
[testng] [2024-04-08 01:21:19,763] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-08 01:21:21,218] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx:
[testng] 01:21:21,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:21,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_01-21-21.log]
[testng] 01:21:21,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486f5df0 - End of configuration.
[testng] [2024-04-08 01:21:21,262] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx:
[testng] 01:21:21,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:21,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-08_01-21-21.log]
[testng] 01:21:21,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@501198ca - End of configuration.
[testng] [2024-04-08 01:21:21,269] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] 01:21:21,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:21,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-08_01-21-21.log]
[testng] 01:21:21,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27949bae - End of configuration.
[testng] [2024-04-08 01:21:21,280] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx:
[testng] 01:21:21,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:21,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-08_01-21-21.log]
[testng] 01:21:21,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a3deb0 - End of configuration.
[testng] [2024-04-08 01:21:21,285] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx:
[testng] 01:21:21,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:21,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_01-21-21.log]
[testng] 01:21:21,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e56cd36 - End of configuration.
[testng] [2024-04-08 01:21:21,290] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx:
[testng] 01:21:21,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:21,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_01-21-21.log]
[testng] 01:21:21,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1b6e4b - End of configuration.
[testng] [2024-04-08 01:21:21,294] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx:
[testng] 01:21:21,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:21,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_01-21-21.log]
[testng] 01:21:21,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4092618a - End of configuration.
[testng] [2024-04-08 01:21:21,298] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx:
[testng] 01:21:21,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:21,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_01-21-21.log]
[testng] 01:21:21,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration.
[testng] [2024-04-08 01:21:21,303] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx:
[testng] 01:21:21,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:21,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_01-21-21.log]
[testng] 01:21:21,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d2419e - End of configuration.
[testng] [2024-04-08 01:21:21,307] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx:
[testng] 01:21:21,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:21,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_01-21-21.log]
[testng] 01:21:21,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21eb1aa3 - End of configuration.
[testng] [2024-04-08 01:21:21,311] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx:
[testng] 01:21:21,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:21,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_01-21-21.log]
[testng] 01:21:21,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46777794 - End of configuration.
[testng] [2024-04-08 01:21:21,316] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx:
[testng] 01:21:21,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:21,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:21,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_01-21-21.log]
[testng] 01:21:21,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration.
[testng] [2024-04-08 01:21:23,711] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-04-08 01:21:23,716] [pool-1-thread-2] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-04-08 01:21:23,719] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx:
[testng] [2024-04-08 01:21:23,723] [pool-1-thread-6] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-04-08 01:21:23,727] [pool-1-thread-1] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-04-08 01:21:23,734] [pool-1-thread-4] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-04-08 01:21:23,739] [pool-1-thread-12] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-04-08 01:21:23,747] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-04-08 01:21:23,751] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-04-08 01:21:23,754] [pool-1-thread-10] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-04-08 01:21:23,758] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-04-08 01:21:23,764] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-04-08 01:21:24,091] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx:
[testng] [2024-04-08 01:21:24,095] [pool-1-thread-8] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] [2024-04-08 01:21:24,101] [pool-1-thread-5] Initializing /data/generated/mri-stack6.pcx:
[testng] [2024-04-08 01:21:24,106] [pool-1-thread-9] Initializing /data/generated/mri-stack26.pcx:
[testng] [2024-04-08 01:21:24,109] [pool-1-thread-7] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-04-08 01:21:24,138] [pool-1-thread-2] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-04-08 01:21:24,142] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-04-08 01:21:24,147] [pool-1-thread-4] Initializing /data/generated/mri-stack12.pcx:
[testng] [2024-04-08 01:21:24,245] [pool-1-thread-9] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] [2024-04-08 01:21:24,254] [pool-1-thread-7] Initializing /data/generated/mri-stack0.pcx:
[testng] [2024-04-08 01:21:24,257] [pool-1-thread-6] Initializing /data/generated/mri-stack10.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS