Started by upstream project "BIOFORMATS-test-repo" build number 216
originally caused by:
Started by upstream project "Trigger" build number 243
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18068240313914368360.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34246_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:00:52,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:00:52,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 02:00:52,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:00:52,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:00:52,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:00:52,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:00:52,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:00:52,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:00:52,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:00:52,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:00:52,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:00:52,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:00:53,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:00:53,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:00:53,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:00:53,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:00:53,183 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:00:53,184 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:00:53,184 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:00:53,184 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:00:53,184 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 02:00:53,185 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 02:00:53,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-10 02:00:53,194] [main] java.version = 21
[testng] 02:00:53,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:00:53,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:00:53,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_02-00-53.log]
[testng] 02:00:53,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-10 02:00:53,242] [main] testng.directory = /data
[testng] [2024-10-10 02:00:53,242] [main] testng.configDirectory = /config
[testng] [2024-10-10 02:00:53,250] [main] testng.multiplier = 1.0
[testng] [2024-10-10 02:00:53,251] [main] testng.in-memory = false
[testng] [2024-10-10 02:00:53,251] [main] testng.allow-missing = false
[testng] [2024-10-10 02:00:53,251] [main] user.language = en
[testng] [2024-10-10 02:00:53,251] [main] user.country = ${user.country}
[testng] [2024-10-10 02:00:53,251] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-10 02:00:57,399] [main] ----------------------------------------
[testng] [2024-10-10 02:00:57,400] [main] Total files: 14
[testng] [2024-10-10 02:00:57,400] [main] Scan time: 4.148 s (296 ms/file)
[testng] [2024-10-10 02:00:57,400] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-10 02:01:33,780] [pool-1-thread-1] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 02:01:33,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:01:33,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:33,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_02-01-33.log]
[testng] 02:01:33,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c8575e2 - End of configuration.
[testng] [2024-10-10 02:01:37,772] [pool-1-thread-12] Initializing /data/samples/BigTIFFLong.tif:
[testng] 02:01:37,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:01:37,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:37,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_02-01-37.log]
[testng] 02:01:37,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@232506f8 - End of configuration.
[testng] [2024-10-10 02:01:39,057] [pool-1-thread-11] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 02:01:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:01:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:39,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_02-01-39.log]
[testng] 02:01:39,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9bae7 - End of configuration.
[testng] [2024-10-10 02:01:40,598] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 02:01:40,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:01:40,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:40,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_02-01-40.log]
[testng] 02:01:40,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5172df74 - End of configuration.
[testng] [2024-10-10 02:01:41,584] [pool-1-thread-9] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 02:01:41,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:01:41,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:41,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_02-01-41.log]
[testng] 02:01:41,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489f13d6 - End of configuration.
[testng] [2024-10-10 02:01:43,351] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 02:01:43,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:01:43,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:43,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_02-01-43.log]
[testng] 02:01:43,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b76a90 - End of configuration.
[testng] [2024-10-10 02:01:44,538] [pool-1-thread-7] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 02:01:44,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:01:44,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:44,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_02-01-44.log]
[testng] 02:01:44,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63f4ebb0 - End of configuration.
[testng] [2024-10-10 02:01:45,796] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 02:01:45,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:01:45,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:45,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_02-01-45.log]
[testng] 02:01:45,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fdb7478 - End of configuration.
[testng] [2024-10-10 02:01:47,260] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 02:01:47,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:01:47,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:47,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_02-01-47.log]
[testng] 02:01:47,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@588942a2 - End of configuration.
[testng] [2024-10-10 02:01:48,993] [pool-1-thread-4] Initializing /data/samples/Classic.tif:
[testng] 02:01:48,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:01:48,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:48,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_02-01-48.log]
[testng] 02:01:48,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b9c9a7 - End of configuration.
[testng] [2024-10-10 02:01:51,191] [pool-1-thread-3] Initializing /data/samples/BigTIFF.tif:
[testng] 02:01:51,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:01:51,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:51,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_02-01-51.log]
[testng] 02:01:51,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306bc414 - End of configuration.
[testng] [2024-10-10 02:01:52,759] [pool-1-thread-2] Initializing /data/carlsen/Olympics8.tif:
[testng] 02:01:52,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:01:52,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:52,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_02-01-52.log]
[testng] 02:01:52,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d726947 - End of configuration.
[testng] [2024-10-10 02:02:04,802] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 33 seconds
Finished: SUCCESS