Started by upstream project "BIOFORMATS-test-repo" build number 216
originally caused by:
Started by upstream project "Trigger" build number 243
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12656482435640071429.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34330_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:51:06,217 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:51:06,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 05:51:06,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:51:06,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:51:06,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:51:06,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:51:06,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:51:06,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:51:06,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:51:06,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:51:06,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:51:06,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:51:06,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:51:06,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:51:06,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:51:06,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:51:06,417 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:51:06,417 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:51:06,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:51:06,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:51:06,417 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 05:51:06,418 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 05:51:06,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-10 05:51:06,428] [main] java.version = 21
[testng] 05:51:06,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:51:06,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:06,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_05-51-06.log]
[testng] 05:51:06,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-10-10 05:51:06,477] [main] testng.directory = /data
[testng] [2024-10-10 05:51:06,477] [main] testng.configDirectory = /config
[testng] [2024-10-10 05:51:06,486] [main] testng.multiplier = 1.0
[testng] [2024-10-10 05:51:06,487] [main] testng.in-memory = false
[testng] [2024-10-10 05:51:06,487] [main] testng.allow-missing = false
[testng] [2024-10-10 05:51:06,487] [main] user.language = en
[testng] [2024-10-10 05:51:06,487] [main] user.country = ${user.country}
[testng] [2024-10-10 05:51:06,487] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-10 05:51:07,151] [main] ----------------------------------------
[testng] [2024-10-10 05:51:07,151] [main] Total files: 21
[testng] [2024-10-10 05:51:07,151] [main] Scan time: 0.664 s (31 ms/file)
[testng] [2024-10-10 05:51:07,152] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-10 05:51:10,238] [pool-1-thread-1] Initializing /data/samples/StarV838.png:
[testng] 05:51:10,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:51:10,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_05-51-10.log]
[testng] 05:51:10,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4777fb - End of configuration.
[testng] [2024-10-10 05:51:10,279] [pool-1-thread-12] Initializing /data/samples/william_wong04.png:
[testng] 05:51:10,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:51:10,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_05-51-10.log]
[testng] 05:51:10,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570ecaa - End of configuration.
[testng] [2024-10-10 05:51:10,307] [pool-1-thread-11] Initializing /data/samples/joanna_viera01.png:
[testng] 05:51:10,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:51:10,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_05-51-10.log]
[testng] 05:51:10,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c4fdb7 - End of configuration.
[testng] [2024-10-10 05:51:10,338] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_two.png:
[testng] 05:51:10,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:51:10,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_05-51-10.log]
[testng] 05:51:10,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d438e37 - End of configuration.
[testng] [2024-10-10 05:51:10,367] [pool-1-thread-9] Initializing /data/samples/Matrix.png:
[testng] 05:51:10,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:51:10,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_05-51-10.log]
[testng] 05:51:10,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292262e3 - End of configuration.
[testng] [2024-10-10 05:51:10,399] [pool-1-thread-8] Initializing /data/qa-7473/n.tif:
[testng] 05:51:10,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:51:10,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:10,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_05-51-10.log]
[testng] 05:51:10,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ca2bb95 - End of configuration.
[testng] [2024-10-10 05:51:11,848] [pool-1-thread-7] Initializing /data/samples/PhugAnimation3.png:
[testng] 05:51:11,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:51:11,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:11,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_05-51-11.log]
[testng] 05:51:11,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aab4b6 - End of configuration.
[testng] [2024-10-10 05:51:11,888] [pool-1-thread-6] Initializing /data/samples/MoonPhases.png:
[testng] 05:51:11,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:51:11,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:11,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_05-51-11.log]
[testng] 05:51:11,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@167b6194 - End of configuration.
[testng] [2024-10-10 05:51:11,928] [pool-1-thread-5] Initializing /data/samples/chompy2.png:
[testng] 05:51:11,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:51:11,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:11,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_05-51-11.log]
[testng] 05:51:11,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@529ddb8d - End of configuration.
[testng] [2024-10-10 05:51:11,968] [pool-1-thread-4] Initializing /data/samples/william_wong01.png:
[testng] 05:51:11,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:51:11,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:11,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_05-51-11.log]
[testng] 05:51:11,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143761f9 - End of configuration.
[testng] [2024-10-10 05:51:12,012] [pool-1-thread-3] Initializing /data/samples/william_wong05.png:
[testng] 05:51:12,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:51:12,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:12,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_05-51-12.log]
[testng] 05:51:12,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dff74a6 - End of configuration.
[testng] [2024-10-10 05:51:12,046] [pool-1-thread-2] Initializing /data/qa-7473/x.png:
[testng] 05:51:12,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:51:12,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:51:12,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_05-51-12.log]
[testng] 05:51:12,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dedc0 - End of configuration.
[testng] [2024-10-10 05:51:14,086] [pool-1-thread-11] Initializing /data/samples/spinfox.png:
[testng] [2024-10-10 05:51:14,110] [pool-1-thread-2] Initializing /data/samples/monkey_apng.png:
[testng] [2024-10-10 05:51:14,133] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_one.png:
[testng] [2024-10-10 05:51:14,159] [pool-1-thread-3] Initializing /data/colin/test.sfstdge.png:
[testng] [2024-10-10 05:51:14,601] [pool-1-thread-9] Initializing /data/samples/phug_logo.png:
[testng] [2024-10-10 05:51:14,656] [pool-1-thread-5] Initializing /data/samples/orbit.png:
[testng] [2024-10-10 05:51:14,712] [pool-1-thread-6] Initializing /data/samples/william_wong02.png:
[testng] [2024-10-10 05:51:14,760] [pool-1-thread-1] Initializing /data/samples/Sun.png:
[testng] [2024-10-10 05:51:14,822] [pool-1-thread-7] Initializing /data/samples/atom.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS