Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
Started by upstream project "Trigger" build number 244
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12168049700539860553.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34394_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:51:03,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:51:03,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 01:51:03,804 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:51:03,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:51:03,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:51:03,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:51:03,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:51:03,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:51:03,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:51:03,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:51:03,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:51:03,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:51:04,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:51:04,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:51:04,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:51:04,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:51:04,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:51:04,046 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:51:04,046 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:51:04,047 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:51:04,047 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 01:51:04,048 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 01:51:04,048 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-11 01:51:04,057] [main] java.version = 1.8.0_342
[testng] 01:51:04,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:51:04,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:51:04,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_01-51-04.log]
[testng] 01:51:04,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-11 01:51:04,104] [main] testng.directory = /data
[testng] [2024-10-11 01:51:04,105] [main] testng.configDirectory = /config
[testng] [2024-10-11 01:51:04,116] [main] testng.multiplier = 1.0
[testng] [2024-10-11 01:51:04,116] [main] testng.in-memory = false
[testng] [2024-10-11 01:51:04,116] [main] testng.allow-missing = false
[testng] [2024-10-11 01:51:04,116] [main] user.language = en
[testng] [2024-10-11 01:51:04,116] [main] user.country = ${user.country}
[testng] [2024-10-11 01:51:04,116] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-11 02:01:38,972] [main] ----------------------------------------
[testng] [2024-10-11 02:01:38,972] [main] Total files: 226
[testng] [2024-10-11 02:01:38,973] [main] Scan time: 634.856 s (2809 ms/file)
[testng] [2024-10-11 02:01:38,973] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-11 02:08:25,797] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 02:08:25,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:08:25,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_02-08-25.log]
[testng] 02:08:25,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b69e40d - End of configuration.
[testng] [2024-10-11 02:08:25,860] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 02:08:25,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:08:25,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:25,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_02-08-25.log]
[testng] 02:08:25,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@746e35b - End of configuration.
[testng] [2024-10-11 02:08:26,196] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif:
[testng] 02:08:26,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:08:26,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_02-08-26.log]
[testng] 02:08:26,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78ad00a4 - End of configuration.
[testng] [2024-10-11 02:08:26,724] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 02:08:26,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:08:26,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:26,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_02-08-26.log]
[testng] 02:08:26,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704545cd - End of configuration.
[testng] [2024-10-11 02:08:27,000] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 02:08:27,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:08:27,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:27,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_02-08-27.log]
[testng] 02:08:27,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@556fd823 - End of configuration.
[testng] [2024-10-11 02:08:27,815] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 02:08:27,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:08:27,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:27,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_02-08-27.log]
[testng] 02:08:27,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ba956e - End of configuration.
[testng] [2024-10-11 02:08:28,504] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL:
[testng] 02:08:28,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:08:28,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:28,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_02-08-28.log]
[testng] 02:08:28,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8e7948 - End of configuration.
[testng] [2024-10-11 02:08:28,753] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 02:08:28,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:08:28,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:28,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_02-08-28.log]
[testng] 02:08:28,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3356a668 - End of configuration.
[testng] [2024-10-11 02:08:29,103] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 02:08:29,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:08:29,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:29,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_02-08-29.log]
[testng] 02:08:29,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa1a5b0 - End of configuration.
[testng] [2024-10-11 02:08:29,517] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 02:08:29,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:08:29,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:29,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_02-08-29.log]
[testng] 02:08:29,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d200a8 - End of configuration.
[testng] [2024-10-11 02:08:29,561] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 02:08:29,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:08:29,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:29,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_02-08-29.log]
[testng] 02:08:29,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c25c5f - End of configuration.
[testng] [2024-10-11 02:08:30,246] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 02:08:30,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:08:30,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:30,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_02-08-30.log]
[testng] 02:08:30,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f16161 - End of configuration.
[testng] [2024-10-11 02:08:34,238] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-10-11 02:08:34,726] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-11 02:08:35,045] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-10-11 02:08:35,128] [pool-1-thread-10] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-11 02:08:35,789] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-10-11 02:08:37,461] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-10-11 02:08:37,703] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-10-11 02:08:38,110] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-10-11 02:08:38,160] [pool-1-thread-3] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-10-11 02:08:38,504] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-10-11 02:08:38,983] [pool-1-thread-1] Initializing /data/iplab/Actin.IPL:
[testng] [2024-10-11 02:08:39,185] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-11 02:08:39,893] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-10-11 02:08:41,100] [pool-1-thread-3] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-10-11 02:08:41,265] [pool-1-thread-9] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-10-11 02:08:41,419] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 17 minutes 47 seconds
Finished: SUCCESS