Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
Started by upstream project "Trigger" build number 244
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17568325868593651958.sh
+ '[' perkinelmer-densitometer = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34435_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:45:52,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:45:52,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 03:45:52,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:45:52,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:45:52,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:45:52,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:45:52,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:45:53,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:45:53,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:45:53,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:45:53,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:45:53,249 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:45:53,249 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:45:53,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:45:53,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:45:53,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 03:45:53,250 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 03:45:53,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-11 03:45:53,260] [main] java.version = 1.8.0_342
[testng] 03:45:53,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:45:53,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:45:53,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_03-45-53.log]
[testng] 03:45:53,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-11 03:45:53,317] [main] testng.directory = /data
[testng] [2024-10-11 03:45:53,317] [main] testng.configDirectory = /config
[testng] [2024-10-11 03:45:53,332] [main] testng.multiplier = 1.0
[testng] [2024-10-11 03:45:53,332] [main] testng.in-memory = false
[testng] [2024-10-11 03:45:53,332] [main] testng.allow-missing = false
[testng] [2024-10-11 03:45:53,332] [main] user.language = en
[testng] [2024-10-11 03:45:53,332] [main] user.country = ${user.country}
[testng] [2024-10-11 03:45:53,332] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-11 03:46:39,818] [main] ----------------------------------------
[testng] [2024-10-11 03:46:39,818] [main] Total files: 19
[testng] [2024-10-11 03:46:39,819] [main] Scan time: 46.485 s (2446 ms/file)
[testng] [2024-10-11 03:46:39,819] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-11 03:47:21,964] [pool-1-thread-1] Initializing /data/ascb/2/V8701001.hdr:
[testng] 03:47:21,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:47:21,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:21,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_03-47-21.log]
[testng] 03:47:21,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d2f53df - End of configuration.
[testng] [2024-10-11 03:47:23,530] [pool-1-thread-11] Initializing /data/ascb/Y7616001.tif:
[testng] 03:47:23,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:47:23,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:23,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_03-47-23.log]
[testng] 03:47:23,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5882381e - End of configuration.
[testng] [2024-10-11 03:47:27,135] [pool-1-thread-10] Initializing /data/ascb/PT1173A001.tif:
[testng] 03:47:27,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:47:27,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:27,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_03-47-27.log]
[testng] 03:47:27,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d7a37c1 - End of configuration.
[testng] [2024-10-11 03:47:29,634] [pool-1-thread-9] Initializing /data/ascb/PT1173A001.hdr:
[testng] 03:47:29,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:47:29,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:29,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_03-47-29.log]
[testng] 03:47:29,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41304e8f - End of configuration.
[testng] [2024-10-11 03:47:31,018] [pool-1-thread-8] Initializing /data/ascb/DP1190.hdr:
[testng] 03:47:31,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:47:31,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:31,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_03-47-31.log]
[testng] 03:47:31,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea4797a - End of configuration.
[testng] [2024-10-11 03:47:32,611] [pool-1-thread-7] Initializing /data/ascb/DP1190.tif:
[testng] 03:47:32,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:47:32,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:32,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_03-47-32.log]
[testng] 03:47:32,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516d6fb0 - End of configuration.
[testng] [2024-10-11 03:47:36,451] [pool-1-thread-6] Initializing /data/ascb/1/T8710001.hdr:
[testng] 03:47:36,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:47:36,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:36,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_03-47-36.log]
[testng] 03:47:36,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5de93832 - End of configuration.
[testng] [2024-10-11 03:47:38,094] [pool-1-thread-5] Initializing /data/ascb/3/PT118001.hdr:
[testng] 03:47:38,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:47:38,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:38,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_03-47-38.log]
[testng] 03:47:38,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7470e88d - End of configuration.
[testng] [2024-10-11 03:47:39,659] [pool-1-thread-4] Initializing /data/ascb/Y7616001.hdr:
[testng] 03:47:39,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:47:39,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:39,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_03-47-39.log]
[testng] 03:47:39,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174b8932 - End of configuration.
[testng] [2024-10-11 03:47:41,347] [pool-1-thread-3] Initializing /data/ascb/U8092001.tif:
[testng] 03:47:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:47:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:41,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_03-47-41.log]
[testng] 03:47:41,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44795e83 - End of configuration.
[testng] [2024-10-11 03:47:44,380] [pool-1-thread-2] Initializing /data/ascb/U8092001.hdr:
[testng] 03:47:44,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:47:44,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:47:44,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_03-47-44.log]
[testng] 03:47:44,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68624647 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 19 seconds
Finished: SUCCESS