Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
Started by upstream project "Trigger" build number 244
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3175594551068299861.sh
+ '[' sis = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34449_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:32:49,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:32:49,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:32:49,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:32:49,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:32:49,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:32:49,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:32:49,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:32:49,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:32:49,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:32:49,864 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:32:49,864 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:32:49,864 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:32:50,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:32:50,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:32:50,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:32:50,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:32:50,107 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:32:50,107 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:32:50,107 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:32:50,108 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:32:50,108 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:32:50,108 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:32:50,109 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-11 04:32:50,118] [main] java.version = 1.8.0_342
[testng] 04:32:50,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:32:50,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:32:50,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_04-32-50.log]
[testng] 04:32:50,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-11 04:32:50,166] [main] testng.directory = /data
[testng] [2024-10-11 04:32:50,167] [main] testng.configDirectory = /config
[testng] [2024-10-11 04:32:50,178] [main] testng.multiplier = 1.0
[testng] [2024-10-11 04:32:50,178] [main] testng.in-memory = false
[testng] [2024-10-11 04:32:50,178] [main] testng.allow-missing = false
[testng] [2024-10-11 04:32:50,178] [main] user.language = en
[testng] [2024-10-11 04:32:50,178] [main] user.country = ${user.country}
[testng] [2024-10-11 04:32:50,178] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-11 04:33:01,681] [main] ----------------------------------------
[testng] [2024-10-11 04:33:01,681] [main] Total files: 13
[testng] [2024-10-11 04:33:01,681] [main] Scan time: 11.503 s (884 ms/file)
[testng] [2024-10-11 04:33:01,681] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-11 04:33:58,468] [pool-1-thread-1] Initializing /data/russell/Arbacia 2week ADL.tif:
[testng] 04:33:58,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:33:58,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:33:58,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_04-33-58.log]
[testng] 04:33:58,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2f135b - End of configuration.
[testng] [2024-10-11 04:34:02,273] [pool-1-thread-11] Initializing /data/glen/L1468a-2_4_15000X.tif:
[testng] 04:34:02,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:34:02,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:02,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_04-34-02.log]
[testng] 04:34:02,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f653543 - End of configuration.
[testng] [2024-10-11 04:34:06,093] [pool-1-thread-10] Initializing /data/glen/L1500k P_4_7500X.tif:
[testng] 04:34:06,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:34:06,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:06,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_04-34-06.log]
[testng] 04:34:06,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e44afd1 - End of configuration.
[testng] [2024-10-11 04:34:09,353] [pool-1-thread-9] Initializing /data/strand/MIA.tif:
[testng] 04:34:09,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:34:09,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:09,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_04-34-09.log]
[testng] 04:34:09,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71cfd197 - End of configuration.
[testng] [2024-10-11 04:34:13,390] [pool-1-thread-8] Initializing /data/glen/CG 3.31 10K.tif:
[testng] 04:34:13,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:34:13,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:13,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_04-34-13.log]
[testng] 04:34:13,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a45fd1e - End of configuration.
[testng] [2024-10-11 04:34:17,998] [pool-1-thread-7] Initializing /data/dimitri/ELN-ARM_00049_38.tif:
[testng] 04:34:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:34:17,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:17,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_04-34-17.log]
[testng] 04:34:17,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d53fff1 - End of configuration.
[testng] [2024-10-11 04:34:22,342] [pool-1-thread-6] Initializing /data/pki/Tv2.tif:
[testng] 04:34:22,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:34:22,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:22,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_04-34-22.log]
[testng] 04:34:22,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3338150c - End of configuration.
[testng] [2024-10-11 04:34:26,725] [pool-1-thread-5] Initializing /data/glen/CG 3.31 20K.tif:
[testng] 04:34:26,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:34:26,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:26,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_04-34-26.log]
[testng] 04:34:26,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ca5412a - End of configuration.
[testng] [2024-10-11 04:34:29,658] [pool-1-thread-4] Initializing /data/glen/L1500k P_3_7500X.tif:
[testng] 04:34:29,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:34:29,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:29,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_04-34-29.log]
[testng] 04:34:29,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cad303 - End of configuration.
[testng] [2024-10-11 04:34:33,816] [pool-1-thread-3] Initializing /data/glen/CG 3.31 15K.tif:
[testng] 04:34:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:34:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:33,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_04-34-33.log]
[testng] 04:34:33,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb997f7 - End of configuration.
[testng] [2024-10-11 04:34:40,314] [pool-1-thread-2] Initializing /data/strand/FS44-1-254.tif:
[testng] 04:34:40,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:34:40,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:34:40,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_04-34-40.log]
[testng] 04:34:40,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6015eb94 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 29 seconds
Finished: SUCCESS