Started by upstream project "BIOFORMATS-test-repo" build number 27 originally caused by: Started by upstream project "Trigger" build number 30 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1651670082428728288.sh + '[' samples = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_3446_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:26:10,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:10,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:10,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:10,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:10,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:10,997 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:10,997 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:10,997 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:10,998 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:26:10,998 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:26:10,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 391 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-08 01:26:11,008] [main] java.version = 1.8.0_342 [testng] 01:26:11,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:11,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:11,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-08_01-26-11.log] [testng] 01:26:11,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-08 01:26:11,061] [main] testng.directory = /data [testng] [2024-04-08 01:26:11,061] [main] testng.configDirectory = /config [testng] [2024-04-08 01:26:11,074] [main] testng.multiplier = 1.0 [testng] [2024-04-08 01:26:11,074] [main] testng.in-memory = false [testng] [2024-04-08 01:26:11,074] [main] testng.allow-missing = false [testng] [2024-04-08 01:26:11,074] [main] user.language = fr [testng] [2024-04-08 01:26:11,074] [main] user.country = FR [testng] [2024-04-08 01:26:11,075] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-08 01:26:33,806] [main] ---------------------------------------- [testng] [2024-04-08 01:26:33,806] [main] Total files: 164 [testng] [2024-04-08 01:26:33,806] [main] Scan time: 22.731 s (138 ms/file) [testng] [2024-04-08 01:26:33,806] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-08 01:26:43,736] [pool-1-thread-1] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] 01:26:43,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:43,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-08_01-26-43.log] [testng] 01:26:43,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116202ce - End of configuration. [testng] [2024-04-08 01:26:43,775] [pool-1-thread-12] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] 01:26:43,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:43,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-08_01-26-43.log] [testng] 01:26:43,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21204586 - End of configuration. [testng] [2024-04-08 01:26:43,794] [pool-1-thread-11] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] 01:26:43,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:43,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-08_01-26-43.log] [testng] 01:26:43,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68565404 - End of configuration. [testng] [2024-04-08 01:26:43,865] [pool-1-thread-10] Initializing /data/ome/Adultmidsection.lsm: [testng] 01:26:43,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:43,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-08_01-26-43.log] [testng] 01:26:43,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28061bc2 - End of configuration. [testng] [2024-04-08 01:26:43,908] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk: [testng] 01:26:43,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:43,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-08_01-26-43.log] [testng] 01:26:43,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6993218c - End of configuration. [testng] [2024-04-08 01:26:44,061] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.bmp: [testng] 01:26:44,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:44,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-08_01-26-44.log] [testng] 01:26:44,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24b41cf9 - End of configuration. [testng] [2024-04-08 01:26:44,076] [pool-1-thread-7] Initializing /data/ome/embryo.lsm: [testng] 01:26:44,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:44,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-08_01-26-44.log] [testng] 01:26:44,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cba794d - End of configuration. [testng] [2024-04-08 01:26:44,122] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] 01:26:44,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:44,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-08_01-26-44.log] [testng] 01:26:44,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f79dfaf - End of configuration. [testng] [2024-04-08 01:26:44,142] [pool-1-thread-5] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] 01:26:44,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:44,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-08_01-26-44.log] [testng] 01:26:44,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c4d6ae - End of configuration. [testng] [2024-04-08 01:26:44,164] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm: [testng] 01:26:44,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:44,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-08_01-26-44.log] [testng] 01:26:44,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729a4cd1 - End of configuration. [testng] [2024-04-08 01:26:44,176] [pool-1-thread-3] Initializing /data/ome/worm.tiff: [testng] 01:26:44,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:44,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-08_01-26-44.log] [testng] 01:26:44,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c5bb09 - End of configuration. [testng] [2024-04-08 01:26:44,243] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 01:26:44,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:44,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-08_01-26-44.log] [testng] 01:26:44,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715d49ba - End of configuration. [testng] [2024-04-08 01:26:46,802] [pool-1-thread-6] Initializing /data/ome/C1.lsm: [testng] [2024-04-08 01:26:46,819] [pool-1-thread-1] Initializing /data/sdub/sdub.pattern: [testng] [2024-04-08 01:26:47,015] [pool-1-thread-5] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2024-04-08 01:26:47,025] [pool-1-thread-10] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2024-04-08 01:26:47,055] [pool-1-thread-7] Initializing /data/openjpeg/Rome.ppm: [testng] [2024-04-08 01:26:47,062] [pool-1-thread-2] Initializing /data/openjpeg/Facade.bmp: [testng] [2024-04-08 01:26:47,144] [pool-1-thread-9] Initializing /data/ome/anusgfpzs.lsm: [testng] [2024-04-08 01:26:47,335] [pool-1-thread-5] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2024-04-08 01:26:47,387] [pool-1-thread-11] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2024-04-08 01:26:47,555] [pool-1-thread-7] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2024-04-08 01:26:47,604] [pool-1-thread-6] Initializing /data/openjpeg/Cevennes2.jp2: [testng] [2024-04-08 01:26:47,913] [pool-1-thread-5] Initializing /data/openjpeg/Facade.pnm: [testng] [2024-04-08 01:26:47,923] [pool-1-thread-4] Initializing /data/openjpeg/Rome.bmp: [testng] [2024-04-08 01:26:47,955] [pool-1-thread-9] Initializing /data/ome/tiffany.color.tiff: [testng] [2024-04-08 01:26:48,020] [pool-1-thread-3] Initializing /data/ome/cb_1.r3d: [testng] [2024-04-08 01:26:48,287] [pool-1-thread-7] Initializing /data/openjpeg/Bretagne1.j2k: [testng] [2024-04-08 01:26:48,644] [pool-1-thread-4] Initializing /data/openjpeg/Bretagne2.ppm: [testng] [2024-04-08 01:26:48,716] [pool-1-thread-1] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] [2024-04-08 01:26:48,756] [pool-1-thread-11] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2024-04-08 01:26:48,875] [pool-1-thread-12] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2024-04-08 01:26:48,880] [pool-1-thread-9] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2024-04-08 01:26:49,116] [pool-1-thread-3] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2024-04-08 01:26:49,125] [pool-1-thread-12] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2024-04-08 01:26:49,177] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2024-04-08 01:26:49,234] [pool-1-thread-8] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2024-04-08 01:26:49,271] [pool-1-thread-9] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2024-04-08 01:26:49,358] [pool-1-thread-3] Initializing /data/ome/011B1_Morph.HTD: [testng] [2024-04-08 01:26:50,025] [pool-1-thread-6] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2024-04-08 01:26:50,058] [pool-1-thread-5] Initializing /data/openjpeg/Rome.jp2: [testng] [2024-04-08 01:26:50,070] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes2.bmp: [testng] [2024-04-08 01:26:50,229] [pool-1-thread-11] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2024-04-08 01:26:50,286] [pool-1-thread-8] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2024-04-08 01:26:50,452] [pool-1-thread-2] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2024-04-08 01:26:50,476] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2024-04-08 01:26:50,554] [pool-1-thread-7] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [2024-04-08 01:26:50,631] [pool-1-thread-11] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2024-04-08 01:26:50,643] [pool-1-thread-12] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2024-04-08 01:26:50,809] [pool-1-thread-2] Initializing /data/TAABA/TAABA.pattern: [testng] [2024-04-08 01:26:52,687] [pool-1-thread-1] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [2024-04-08 01:26:52,863] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2024-04-08 01:26:52,893] [pool-1-thread-4] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2024-04-08 01:26:52,950] [pool-1-thread-11] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2024-04-08 01:26:53,063] [pool-1-thread-8] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] [2024-04-08 01:26:53,089] [pool-1-thread-4] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] [2024-04-08 01:26:53,200] [pool-1-thread-12] Initializing /data/10-31 E1/10-31 E1.tif: [testng] [2024-04-08 01:26:53,455] [pool-1-thread-4] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] [2024-04-08 01:26:53,759] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 25 seconds Finished: SUCCESS