Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
 Started by upstream project "Trigger" build number 244
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8356254046521672315.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34471_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 06:36:15,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:36:15,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 06:36:15,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:36:15,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:36:15,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:36:15,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:36:15,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:36:15,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:36:15,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:36:15,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:36:15,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:36:15,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:36:15,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:36:15,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:36:15,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:36:15,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:36:15,988 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:36:15,988 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:36:15,988 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:36:15,989 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:36:15,989 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 06:36:15,989 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 06:36:15,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-11 06:36:15,999] [main] java.version = 1.8.0_342
   [testng] 06:36:16,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:36:16,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:36:16,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_06-36-16.log]
   [testng] 06:36:16,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-10-11 06:36:16,048] [main] testng.directory = /data
   [testng] [2024-10-11 06:36:16,048] [main] testng.configDirectory = /config
   [testng] [2024-10-11 06:36:16,059] [main] testng.multiplier = 1.0
   [testng] [2024-10-11 06:36:16,059] [main] testng.in-memory = false
   [testng] [2024-10-11 06:36:16,059] [main] testng.allow-missing = false
   [testng] [2024-10-11 06:36:16,059] [main] user.language = en
   [testng] [2024-10-11 06:36:16,059] [main] user.country = ${user.country}
   [testng] [2024-10-11 06:36:16,059] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-10-11 06:37:25,872] [main] ----------------------------------------
   [testng] [2024-10-11 06:37:25,872] [main] Total files: 2539
   [testng] [2024-10-11 06:37:25,872] [main] Scan time: 69.812 s (27 ms/file)
   [testng] [2024-10-11 06:37:25,873] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-11 06:38:20,551] [pool-1-thread-1] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01: 
   [testng] 06:38:20,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:38:20,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:20,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_06-38-20.log]
   [testng] 06:38:20,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64191666 - End of configuration.
   [testng] [2024-10-11 06:38:21,353] [pool-1-thread-12] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01: 
   [testng] 06:38:21,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:38:21,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:21,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_06-38-21.log]
   [testng] 06:38:21,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@694d9568 - End of configuration.
   [testng] [2024-10-11 06:38:22,388] [pool-1-thread-11] Initializing /data/samples/different-field-count/plate_B03f00d0.C01: 
   [testng] 06:38:22,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:38:22,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:22,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_06-38-22.log]
   [testng] 06:38:22,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20229e86 - End of configuration.
   [testng] [2024-10-11 06:38:23,294] [pool-1-thread-10] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB: 
   [testng] 06:38:23,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:38:23,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:23,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_06-38-23.log]
   [testng] 06:38:23,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7771c506 - End of configuration.
   [testng] [2024-10-11 06:38:24,389] [pool-1-thread-9] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01: 
   [testng] 06:38:24,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:38:24,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:24,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_06-38-24.log]
   [testng] 06:38:24,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b3f32a4 - End of configuration.
   [testng] [2024-10-11 06:38:25,438] [pool-1-thread-8] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB: 
   [testng] 06:38:25,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:38:25,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:25,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_06-38-25.log]
   [testng] 06:38:25,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41433876 - End of configuration.
   [testng] [2024-10-11 06:38:26,796] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01: 
   [testng] 06:38:26,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:38:26,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:26,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_06-38-26.log]
   [testng] 06:38:26,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d1f247e - End of configuration.
   [testng] [2024-10-11 06:38:27,994] [pool-1-thread-6] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01: 
   [testng] 06:38:27,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:38:27,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:27,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_06-38-27.log]
   [testng] 06:38:27,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30212c07 - End of configuration.
   [testng] [2024-10-11 06:38:28,910] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01: 
   [testng] 06:38:28,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:38:28,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:28,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_06-38-28.log]
   [testng] 06:38:28,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c9bbca - End of configuration.
   [testng] [2024-10-11 06:38:29,867] [pool-1-thread-4] Initializing /data/omar/FB03f00d1.C01: 
   [testng] 06:38:29,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:38:29,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:29,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_06-38-29.log]
   [testng] 06:38:29,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50184df0 - End of configuration.
   [testng] [2024-10-11 06:38:31,098] [pool-1-thread-3] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB: 
   [testng] 06:38:31,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:38:31,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:31,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_06-38-31.log]
   [testng] 06:38:31,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce7b1f1 - End of configuration.
   [testng] [2024-10-11 06:38:32,151] [pool-1-thread-2] Initializing /data/omar/FB03f00o2.C01: 
   [testng] 06:38:32,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:38:32,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:38:32,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_06-38-32.log]
   [testng] 06:38:32,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14832486 - End of configuration.
   [testng] [2024-10-11 06:38:42,212] [pool-1-thread-10] Initializing /data/omar/FB03f00o1.C01: 
   [testng] [2024-10-11 06:38:49,134] [pool-1-thread-6] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01: 
   [testng] [2024-10-11 06:38:50,131] [pool-1-thread-12] Initializing /data/omar/FB03f00d0.C01: 
   [testng] [2024-10-11 06:38:51,528] [pool-1-thread-7] Initializing /data/omar/FB03f03o2.DIB: 
   [testng] [2024-10-11 06:38:52,641] [pool-1-thread-2] Initializing /data/samples/plate-size/plate_B03f00d0.C01: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 41 minutes 20 seconds
Finished: SUCCESS