Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
 Started by upstream project "Trigger" build number 244
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8951484749344037681.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34484_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 07:00:32,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 07:00:32,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 07:00:32,589 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:00:32,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 07:00:32,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 07:00:32,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 07:00:32,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 07:00:32,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:00:32,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 07:00:32,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 07:00:32,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 07:00:32,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 07:00:32,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 07:00:32,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 07:00:32,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 07:00:32,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 07:00:32,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 07:00:32,859 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 07:00:32,860 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 07:00:32,860 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 07:00:32,860 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 07:00:32,861 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 07:00:32,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-11 07:00:32,871] [main] java.version = 1.8.0_342
   [testng] 07:00:32,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:00:32,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:00:32,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_07-00-32.log]
   [testng] 07:00:32,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-10-11 07:00:32,925] [main] testng.directory = /data
   [testng] [2024-10-11 07:00:32,925] [main] testng.configDirectory = /config
   [testng] [2024-10-11 07:00:32,937] [main] testng.multiplier = 1.0
   [testng] [2024-10-11 07:00:32,938] [main] testng.in-memory = false
   [testng] [2024-10-11 07:00:32,938] [main] testng.allow-missing = false
   [testng] [2024-10-11 07:00:32,938] [main] user.language = en
   [testng] [2024-10-11 07:00:32,938] [main] user.country = ${user.country}
   [testng] [2024-10-11 07:00:32,938] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-10-11 07:01:53,690] [main] ----------------------------------------
   [testng] [2024-10-11 07:01:53,690] [main] Total files: 68
   [testng] [2024-10-11 07:01:53,690] [main] Scan time: 80.752 s (1187 ms/file)
   [testng] [2024-10-11 07:01:53,691] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 60 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-11 07:02:49,402] [pool-1-thread-1] Initializing /data/kay/Imaris503_test_Kay.ims: 
   [testng] 07:02:49,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 07:02:49,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:49,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_07-02-49.log]
   [testng] 07:02:49,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d7582c0 - End of configuration.
   [testng] [2024-10-11 07:02:49,999] [pool-1-thread-12] Initializing /data/james/apoEcherry_IL10GFP_tfn647_1_R3D_D3D-Display Adjustment-Save-2011-7-5-1.ims: 
   [testng] 07:02:49,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 07:02:49,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:50,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_07-02-50.log]
   [testng] 07:02:50,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368f98dc - End of configuration.
   [testng] [2024-10-11 07:02:50,540] [pool-1-thread-11] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: 
   [testng] 07:02:50,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 07:02:50,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:50,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_07-02-50.log]
   [testng] 07:02:50,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d1aba69 - End of configuration.
   [testng] [2024-10-11 07:02:51,112] [pool-1-thread-10] Initializing /data/jason/imaris_5_5_demoimages/PyramidalCell.ims: 
   [testng] 07:02:51,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 07:02:51,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:51,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_07-02-51.log]
   [testng] 07:02:51,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a486f94 - End of configuration.
   [testng] [2024-10-11 07:02:51,702] [pool-1-thread-9] Initializing /data/qa-17522/2016-12-14_08.43.34_Sample Prefix_WAINWRIGHT James_Protocol.ims: 
   [testng] 07:02:51,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 07:02:51,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:51,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_07-02-51.log]
   [testng] 07:02:51,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a7514dc - End of configuration.
   [testng] [2024-10-11 07:02:59,202] [pool-1-thread-8] Initializing /data/jason/imaris_5_5_demoimages/HeLaCell.ims: 
   [testng] 07:02:59,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 07:02:59,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:59,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_07-02-59.log]
   [testng] 07:02:59,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53087d4f - End of configuration.
   [testng] [2024-10-11 07:02:59,806] [pool-1-thread-7] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims: 
   [testng] 07:02:59,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 07:02:59,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:02:59,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_07-02-59.log]
   [testng] 07:02:59,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d663132 - End of configuration.
   [testng] [2024-10-11 07:03:00,335] [pool-1-thread-6] Initializing /data/qa-17522/2016-07-26_17.11.03_Sample Prefix_5P298C2_Protocol.ims: 
   [testng] 07:03:00,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 07:03:00,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:03:00,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_07-03-00.log]
   [testng] 07:03:00,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f783436 - End of configuration.
   [testng] [2024-10-11 07:03:00,883] [pool-1-thread-5] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims: 
   [testng] 07:03:00,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 07:03:00,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:03:00,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_07-03-00.log]
   [testng] 07:03:00,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4032a218 - End of configuration.
   [testng] [2024-10-11 07:03:01,478] [pool-1-thread-4] Initializing /data/generated/MF-2CH-Z-T.ims: 
   [testng] 07:03:01,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 07:03:01,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:03:01,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_07-03-01.log]
   [testng] 07:03:01,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@666fb269 - End of configuration.
   [testng] [2024-10-11 07:03:01,720] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0004.ims: 
   [testng] 07:03:01,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 07:03:01,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:03:01,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_07-03-01.log]
   [testng] 07:03:01,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40af1ec2 - End of configuration.
   [testng] [2024-10-11 07:03:01,935] [pool-1-thread-2] Initializing /data/generated/10-31_E_t0011.ims: 
   [testng] 07:03:01,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 07:03:01,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:03:01,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_07-03-01.log]
   [testng] 07:03:01,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9ae7b4 - End of configuration.

BUILD SUCCESSFUL
Total time: 4 minutes 9 seconds
Finished: SUCCESS