Started by upstream project "BIOFORMATS-test-repo" build number 217
originally caused by:
Started by upstream project "Trigger" build number 244
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6669965019709856497.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34510_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 08:13:48,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:13:48,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 08:13:48,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:13:48,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:13:48,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:13:48,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:13:48,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:13:48,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:13:48,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:13:48,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:13:48,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:13:48,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:13:48,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:13:48,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:13:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:13:48,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:13:48,600 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:13:48,600 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:13:48,600 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:13:48,601 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:13:48,601 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 08:13:48,602 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 08:13:48,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-11 08:13:48,612] [main] java.version = 1.8.0_342
[testng] 08:13:48,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:13:48,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:13:48,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_08-13-48.log]
[testng] 08:13:48,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-11 08:13:48,666] [main] testng.directory = /data
[testng] [2024-10-11 08:13:48,667] [main] testng.configDirectory = /config
[testng] [2024-10-11 08:13:48,679] [main] testng.multiplier = 1.0
[testng] [2024-10-11 08:13:48,679] [main] testng.in-memory = false
[testng] [2024-10-11 08:13:48,679] [main] testng.allow-missing = false
[testng] [2024-10-11 08:13:48,679] [main] user.language = en
[testng] [2024-10-11 08:13:48,679] [main] user.country = ${user.country}
[testng] [2024-10-11 08:13:48,679] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-11 08:14:21,717] [main] ----------------------------------------
[testng] [2024-10-11 08:14:21,717] [main] Total files: 944
[testng] [2024-10-11 08:14:21,717] [main] Scan time: 33.037 s (34 ms/file)
[testng] [2024-10-11 08:14:21,717] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-11 08:16:15,624] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 08:16:15,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:16:15,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:15,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_08-16-15.log]
[testng] 08:16:15,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31536cca - End of configuration.
[testng] [2024-10-11 08:16:17,581] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 08:16:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:16:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:17,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_08-16-17.log]
[testng] 08:16:17,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@588d98fe - End of configuration.
[testng] [2024-10-11 08:16:19,213] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 08:16:19,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:16:19,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:19,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_08-16-19.log]
[testng] 08:16:19,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2276f85c - End of configuration.
[testng] [2024-10-11 08:16:20,789] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif:
[testng] 08:16:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:16:20,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:20,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_08-16-20.log]
[testng] 08:16:20,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7026fbf1 - End of configuration.
[testng] [2024-10-11 08:16:22,425] [pool-1-thread-9] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 08:16:22,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:16:22,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:22,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_08-16-22.log]
[testng] 08:16:22,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189fc54a - End of configuration.
[testng] [2024-10-11 08:16:24,018] [pool-1-thread-8] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 08:16:24,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:16:24,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:24,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_08-16-24.log]
[testng] 08:16:24,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f357128 - End of configuration.
[testng] [2024-10-11 08:16:25,919] [pool-1-thread-7] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 08:16:25,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:16:25,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:25,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_08-16-25.log]
[testng] 08:16:25,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64bf678 - End of configuration.
[testng] [2024-10-11 08:16:27,622] [pool-1-thread-6] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 08:16:27,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:16:27,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:27,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_08-16-27.log]
[testng] 08:16:27,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@efa7a4f - End of configuration.
[testng] [2024-10-11 08:16:29,547] [pool-1-thread-5] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 08:16:29,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:16:29,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:29,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_08-16-29.log]
[testng] 08:16:29,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b71a804 - End of configuration.
[testng] [2024-10-11 08:16:31,410] [pool-1-thread-4] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 08:16:31,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:16:31,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:16:31,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_08-16-31.log]
[testng] 08:16:31,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509343f0 - End of configuration.
[testng] [2024-10-11 08:17:35,996] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 08:17:35,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:17:35,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:17:35,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_08-17-35.log]
[testng] 08:17:35,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0e9bdb - End of configuration.
[testng] [2024-10-11 08:17:37,906] [pool-1-thread-2] Initializing /data/brian/Series002_z01.tif:
[testng] 08:17:37,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:17:37,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:17:37,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_08-17-37.log]
[testng] 08:17:37,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57434933 - End of configuration.
[testng] [2024-10-11 08:17:52,117] [pool-1-thread-10] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] [2024-10-11 08:17:57,766] [pool-1-thread-2] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] [2024-10-11 08:18:01,104] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 09:50:00,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 09:50:00,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 09:50:00,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_09-50-00.log]
[testng] 09:50:00,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25aeb5ac - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 96 minutes 14 seconds
Finished: SUCCESS