Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4708369869338366876.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34523_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:55:32,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:55:32,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 08:55:32,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:55:32,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:55:32,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:55:32,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:55:32,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:55:32,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:55:32,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:55:32,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:55:32,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:55:32,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:55:33,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:55:33,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:55:33,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:55:33,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:55:33,044 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:55:33,044 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:55:33,045 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:55:33,045 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:55:33,045 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 08:55:33,046 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 08:55:33,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 08:55:33,057] [main] java.version = 1.8.0_342 [testng] 08:55:33,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:55:33,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:55:33,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_08-55-33.log] [testng] 08:55:33,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 08:55:33,112] [main] testng.directory = /data [testng] [2024-10-11 08:55:33,112] [main] testng.configDirectory = /config [testng] [2024-10-11 08:55:33,125] [main] testng.multiplier = 1.0 [testng] [2024-10-11 08:55:33,125] [main] testng.in-memory = false [testng] [2024-10-11 08:55:33,125] [main] testng.allow-missing = false [testng] [2024-10-11 08:55:33,125] [main] user.language = en [testng] [2024-10-11 08:55:33,125] [main] user.country = ${user.country} [testng] [2024-10-11 08:55:33,125] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 08:55:55,625] [main] ---------------------------------------- [testng] [2024-10-11 08:55:55,625] [main] Total files: 31 [testng] [2024-10-11 08:55:55,625] [main] Scan time: 22.5 s (725 ms/file) [testng] [2024-10-11 08:55:55,625] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 08:56:20,999] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 08:56:21,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:56:21,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:21,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_08-56-21.log] [testng] 08:56:21,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9490ebf - End of configuration. [testng] [2024-10-11 08:56:21,571] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] 08:56:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:56:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:21,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_08-56-21.log] [testng] 08:56:21,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270601a3 - End of configuration. [testng] [2024-10-11 08:56:22,108] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 08:56:22,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:56:22,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:22,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_08-56-22.log] [testng] 08:56:22,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa2da3c - End of configuration. [testng] [2024-10-11 08:56:22,909] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] 08:56:22,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:56:22,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:22,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_08-56-22.log] [testng] 08:56:22,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed58f8a - End of configuration. [testng] [2024-10-11 08:56:23,673] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 08:56:23,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:56:23,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:23,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_08-56-23.log] [testng] 08:56:23,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174b4a36 - End of configuration. [testng] [2024-10-11 08:56:24,397] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] 08:56:24,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:56:24,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:24,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_08-56-24.log] [testng] 08:56:24,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0c830c - End of configuration. [testng] [2024-10-11 08:56:25,031] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 08:56:25,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:56:25,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:25,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_08-56-25.log] [testng] 08:56:25,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75ffadb3 - End of configuration. [testng] [2024-10-11 08:56:25,429] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 08:56:25,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:56:25,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:25,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_08-56-25.log] [testng] 08:56:25,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed5ed8c - End of configuration. [testng] [2024-10-11 08:56:25,984] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2: [testng] 08:56:25,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:56:25,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:25,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_08-56-25.log] [testng] 08:56:25,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dbc1ff - End of configuration. [testng] [2024-10-11 08:56:26,484] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] 08:56:26,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:56:26,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:26,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_08-56-26.log] [testng] 08:56:26,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21433d1c - End of configuration. [testng] [2024-10-11 08:56:28,325] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] 08:56:28,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:56:28,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:28,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_08-56-28.log] [testng] 08:56:28,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36ef025e - End of configuration. [testng] [2024-10-11 08:56:29,004] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 08:56:29,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:56:29,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:29,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_08-56-29.log] [testng] 08:56:29,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72dc91e0 - End of configuration. [testng] [2024-10-11 08:56:36,023] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-11 08:56:36,895] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-10-11 08:56:37,670] [pool-1-thread-12] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-10-11 08:56:38,757] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-10-11 08:56:39,942] [pool-1-thread-1] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-10-11 08:56:40,483] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-10-11 08:56:41,020] [pool-1-thread-4] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-10-11 08:56:45,836] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-10-11 08:56:46,911] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-10-11 08:56:48,419] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] [2024-10-11 08:56:48,988] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-10-11 08:56:52,496] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-10-11 08:56:55,871] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-10-11 08:56:56,748] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-10-11 08:56:57,915] [pool-1-thread-3] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-11 08:57:02,809] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-11 08:57:03,681] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-10-11 08:57:05,186] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 54 seconds Finished: SUCCESS