Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8445774695679793900.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34543_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:30:04,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:30:04,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:30:04,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:04,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:04,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:30:04,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:30:04,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:30:04,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:04,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:04,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:30:04,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:30:04,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:30:05,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:30:05,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:30:05,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:30:05,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:30:05,119 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:30:05,119 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:30:05,119 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:30:05,119 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:30:05,120 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:30:05,120 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:30:05,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 01:30:05,130] [main] java.version = 11.0.16
[testng] 01:30:05,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:30:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:05,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_01-30-05.log]
[testng] 01:30:05,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 01:30:05,194] [main] testng.directory = /data
[testng] [2024-10-12 01:30:05,194] [main] testng.configDirectory = /config
[testng] [2024-10-12 01:30:05,204] [main] testng.multiplier = 1.0
[testng] [2024-10-12 01:30:05,205] [main] testng.in-memory = false
[testng] [2024-10-12 01:30:05,205] [main] testng.allow-missing = false
[testng] [2024-10-12 01:30:05,205] [main] user.language = en
[testng] [2024-10-12 01:30:05,205] [main] user.country = ${user.country}
[testng] [2024-10-12 01:30:05,205] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 01:31:32,827] [main] ----------------------------------------
[testng] [2024-10-12 01:31:32,827] [main] Total files: 315
[testng] [2024-10-12 01:31:32,827] [main] Scan time: 87.622 s (278 ms/file)
[testng] [2024-10-12 01:31:32,828] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 01:50:43,030] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] 01:50:43,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:50:43,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:43,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_01-50-43.log]
[testng] 01:50:43,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22193b5c - End of configuration.
[testng] [2024-10-12 01:50:43,976] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:50:43,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:50:43,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:43,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_01-50-43.log]
[testng] 01:50:43,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1908382d - End of configuration.
[testng] [2024-10-12 01:50:45,293] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] 01:50:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:50:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:45,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_01-50-45.log]
[testng] 01:50:45,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@541fdcf1 - End of configuration.
[testng] [2024-10-12 01:50:45,943] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] 01:50:45,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:50:45,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:45,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_01-50-45.log]
[testng] 01:50:45,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef87181 - End of configuration.
[testng] [2024-10-12 01:50:47,194] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] 01:50:47,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:50:47,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:47,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_01-50-47.log]
[testng] 01:50:47,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bc20f98 - End of configuration.
[testng] [2024-10-12 01:50:48,135] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] 01:50:48,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:50:48,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:48,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_01-50-48.log]
[testng] 01:50:48,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d11671 - End of configuration.
[testng] [2024-10-12 01:50:49,581] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] 01:50:49,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:50:49,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:49,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_01-50-49.log]
[testng] 01:50:49,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5437527f - End of configuration.
[testng] [2024-10-12 01:50:52,037] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] 01:50:52,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:50:52,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:52,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_01-50-52.log]
[testng] 01:50:52,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7192c39f - End of configuration.
[testng] [2024-10-12 01:50:53,814] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] 01:50:53,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:50:53,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:53,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_01-50-53.log]
[testng] 01:50:53,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6623350d - End of configuration.
[testng] [2024-10-12 01:50:54,757] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] 01:50:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:50:54,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:54,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_01-50-54.log]
[testng] 01:50:54,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e3f20f9 - End of configuration.
[testng] [2024-10-12 01:50:55,931] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] 01:50:55,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:50:55,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:55,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_01-50-55.log]
[testng] 01:50:55,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@225ea37b - End of configuration.
[testng] [2024-10-12 01:50:58,640] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir:
[testng] 01:50:58,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:50:58,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:50:58,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_01-50-58.log]
[testng] 01:50:58,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@490f51c0 - End of configuration.
[testng] [2024-10-12 01:51:05,153] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-12 01:51:10,980] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-12 01:51:12,606] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-12 01:51:13,459] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-12 01:51:15,352] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-12 01:51:22,329] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-10-12 01:51:24,940] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-12 01:51:24,984] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-10-12 01:51:26,947] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-12 01:51:29,714] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-12 01:51:34,094] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-12 01:51:35,587] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-12 01:51:40,447] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-12 01:51:44,334] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-12 01:51:45,950] [pool-1-thread-10] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-12 01:51:48,279] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-12 01:51:49,533] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-12 01:51:51,275] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-12 01:51:52,513] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-12 01:52:00,636] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-12 01:52:03,358] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-12 01:52:05,977] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-12 01:52:08,902] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-12 01:52:13,352] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-12 01:52:16,118] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-12 01:52:24,521] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-12 01:52:27,374] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-12 01:52:28,364] [pool-1-thread-1] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-12 01:52:32,027] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-12 01:52:39,485] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-12 01:52:44,010] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-12 01:52:45,973] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-12 01:52:48,407] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-12 01:52:49,442] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-12 01:52:53,052] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-12 01:53:00,920] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-12 01:53:02,711] [pool-1-thread-7] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-12 01:53:04,838] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-12 01:53:07,021] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-12 01:53:10,458] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-12 01:53:15,871] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-12 01:53:19,849] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-12 01:53:42,198] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-12 01:53:46,008] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-10-12 01:53:48,314] [pool-1-thread-12] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-12 01:54:23,160] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-12 01:54:25,648] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-12 01:54:27,772] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-12 01:54:31,025] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-12 01:54:38,447] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-12 01:54:39,327] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-12 01:54:42,253] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-12 01:54:43,674] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-12 01:54:50,081] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-12 01:54:51,420] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-12 01:54:57,580] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-12 01:54:59,816] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-12 01:55:00,796] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-12 01:55:01,651] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-12 01:55:08,791] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-12 01:55:14,130] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-12 01:55:17,912] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-12 01:55:20,222] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-12 01:55:31,154] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-12 01:55:35,819] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-12 01:55:38,090] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-12 01:55:40,177] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-12 01:55:41,128] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-12 01:55:43,081] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-12 01:55:52,279] [pool-1-thread-11] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-12 01:55:55,942] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-12 01:56:02,063] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-12 01:56:03,421] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-12 01:56:05,877] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-12 01:56:07,734] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-12 01:56:14,007] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-12 01:56:18,880] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-12 01:56:19,787] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-12 01:56:21,504] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-12 01:56:22,168] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-12 01:56:23,958] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-12 01:56:33,773] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-12 01:56:36,723] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-12 01:56:39,129] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-12 01:56:44,170] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-12 01:56:46,814] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-10-12 01:56:56,351] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-12 01:56:59,688] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-12 01:57:05,717] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-12 01:57:09,489] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-12 01:57:13,323] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-12 01:57:15,866] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-12 01:57:17,632] [pool-1-thread-4] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-12 01:58:16,646] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-12 01:58:18,170] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-12 01:58:20,103] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-12 01:58:22,074] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-12 01:58:23,022] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-12 01:58:36,188] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-12 01:58:37,210] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-12 01:58:38,230] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-12 01:58:39,491] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-12 01:58:48,828] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-12 01:58:50,913] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-12 01:58:58,165] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-12 01:58:59,913] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-12 01:59:01,870] [pool-1-thread-3] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-12 01:59:08,882] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-12 01:59:09,851] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-12 01:59:12,245] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-12 01:59:14,981] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-12 01:59:18,201] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-12 01:59:22,428] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-12 01:59:23,841] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-12 01:59:25,100] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-12 01:59:27,339] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-12 01:59:28,178] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-12 01:59:31,871] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-12 01:59:33,929] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-12 01:59:35,524] [pool-1-thread-10] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-12 01:59:37,617] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-12 01:59:39,297] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-12 01:59:41,254] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-12 01:59:47,191] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-12 01:59:50,481] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-12 01:59:51,774] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-12 01:59:53,906] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-12 01:59:54,990] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-12 01:59:56,426] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-12 01:59:58,789] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-10-12 02:00:03,350] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-12 02:00:05,753] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-12 02:00:07,126] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-12 02:00:08,934] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-12 02:00:10,118] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-12 02:00:11,780] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-12 02:00:12,467] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-12 02:00:16,527] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-12 02:00:21,384] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-12 02:00:23,775] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-12 02:00:26,335] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-12 02:00:27,376] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-12 02:00:28,705] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-12 02:00:34,447] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-12 02:00:42,185] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-12 02:00:44,000] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-12 02:00:45,577] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-12 02:00:46,719] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-12 02:00:47,349] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-12 02:00:58,280] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-12 02:01:00,220] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-12 02:01:02,993] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-12 02:01:06,644] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-12 02:01:12,375] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-12 02:01:15,766] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-12 02:01:19,407] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-12 02:01:23,732] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-12 02:01:37,448] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-12 02:01:38,955] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-12 02:01:41,532] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-12 02:01:48,991] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-12 02:01:49,928] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-12 02:01:52,394] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-12 02:01:53,337] [pool-1-thread-5] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-12 02:02:00,604] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-12 02:02:01,604] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-12 02:02:03,321] [pool-1-thread-5] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-12 02:02:16,872] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-12 02:02:18,823] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-12 02:02:19,674] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-12 02:02:23,774] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-12 02:02:26,029] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-12 02:02:29,163] [pool-1-thread-1] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-12 02:02:31,969] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-12 02:02:33,149] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-12 02:02:35,367] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-12 02:02:36,618] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-12 02:02:55,489] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-12 02:02:56,641] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-12 02:03:02,642] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 65 minutes 1 second
Finished: SUCCESS