Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5548147885356677022.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34559_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:42:53,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:42:53,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:42:53,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:42:53,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:42:53,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:42:53,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:42:53,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:42:53,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:42:53,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:42:53,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:42:53,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:42:53,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:42:53,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:42:53,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:42:53,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:42:53,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:42:53,862 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:42:53,862 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:42:53,862 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:42:53,863 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:42:53,863 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:42:53,863 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:42:53,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 01:42:53,872] [main] java.version = 11.0.16
[testng] 01:42:53,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:42:53,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:53,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_01-42-53.log]
[testng] 01:42:53,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 01:42:53,921] [main] testng.directory = /data
[testng] [2024-10-12 01:42:53,922] [main] testng.configDirectory = /config
[testng] [2024-10-12 01:42:53,932] [main] testng.multiplier = 1.0
[testng] [2024-10-12 01:42:53,934] [main] testng.in-memory = false
[testng] [2024-10-12 01:42:53,934] [main] testng.allow-missing = false
[testng] [2024-10-12 01:42:53,934] [main] user.language = en
[testng] [2024-10-12 01:42:53,934] [main] user.country = ${user.country}
[testng] [2024-10-12 01:42:53,934] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 01:51:58,335] [main] ----------------------------------------
[testng] [2024-10-12 01:51:58,335] [main] Total files: 226
[testng] [2024-10-12 01:51:58,335] [main] Scan time: 544.401 s (2408 ms/file)
[testng] [2024-10-12 01:51:58,335] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 02:01:00,920] [pool-1-thread-1] Initializing /data/fluoview/Sample_XT.tif:
[testng] 02:01:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:01:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:00,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_02-01-00.log]
[testng] 02:01:00,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b01fe08 - End of configuration.
[testng] [2024-10-12 02:01:02,568] [pool-1-thread-12] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 02:01:02,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:01:02,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:02,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_02-01-02.log]
[testng] 02:01:02,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10221a1d - End of configuration.
[testng] [2024-10-12 02:01:02,706] [pool-1-thread-11] Initializing /data/iplab/Color Histology.IPL:
[testng] 02:01:02,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:01:02,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:02,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_02-01-02.log]
[testng] 02:01:02,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320585dc - End of configuration.
[testng] [2024-10-12 02:01:02,837] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] 02:01:02,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:01:02,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:02,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_02-01-02.log]
[testng] 02:01:02,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@240da70a - End of configuration.
[testng] [2024-10-12 02:01:02,948] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL:
[testng] 02:01:02,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:01:02,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:02,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_02-01-02.log]
[testng] 02:01:02,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3641c20 - End of configuration.
[testng] [2024-10-12 02:01:03,075] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 02:01:03,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:01:03,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:03,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_02-01-03.log]
[testng] 02:01:03,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606b1490 - End of configuration.
[testng] [2024-10-12 02:01:03,407] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 02:01:03,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:01:03,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:03,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_02-01-03.log]
[testng] 02:01:03,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12dc94da - End of configuration.
[testng] [2024-10-12 02:01:05,477] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 02:01:05,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:01:05,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_02-01-05.log]
[testng] 02:01:05,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b1ea9ec - End of configuration.
[testng] [2024-10-12 02:01:05,664] [pool-1-thread-5] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 02:01:05,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:01:05,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_02-01-05.log]
[testng] 02:01:05,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@444d1f58 - End of configuration.
[testng] [2024-10-12 02:01:05,820] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 02:01:05,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:01:05,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:05,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_02-01-05.log]
[testng] 02:01:05,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c2c745 - End of configuration.
[testng] [2024-10-12 02:01:07,536] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 02:01:07,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:01:07,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:07,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_02-01-07.log]
[testng] 02:01:07,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c89a966 - End of configuration.
[testng] [2024-10-12 02:01:08,348] [pool-1-thread-2] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] 02:01:08,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:01:08,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:08,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_02-01-08.log]
[testng] 02:01:08,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4db03a09 - End of configuration.
[testng] [2024-10-12 02:01:13,128] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-10-12 02:01:13,298] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-12 02:01:14,891] [pool-1-thread-10] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-10-12 02:01:15,667] [pool-1-thread-11] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-10-12 02:01:15,778] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-12 02:01:17,037] [pool-1-thread-12] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-10-12 02:01:17,124] [pool-1-thread-5] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-10-12 02:01:17,915] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-10-12 02:01:21,369] [pool-1-thread-12] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-10-12 02:01:22,315] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-10-12 02:01:22,870] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-10-12 02:01:25,144] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-10-12 02:01:25,546] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-12 02:01:25,818] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-10-12 02:01:28,258] [pool-1-thread-2] Initializing /data/iplab/Actin.IPL:
[testng] [2024-10-12 02:01:28,403] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 18 minutes 51 seconds
Finished: SUCCESS