Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4310903925218771757.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34570_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:03:01,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:03:01,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 02:03:01,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:03:01,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:03:01,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:03:01,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:03:01,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:03:01,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:03:01,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:03:01,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:03:01,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:03:01,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:03:01,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:03:01,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:03:01,538 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:03:01,538 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:03:01,538 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 02:03:01,539 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 02:03:01,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 02:03:01,548] [main] java.version = 11.0.16
[testng] 02:03:01,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:03:01,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:01,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_02-03-01.log]
[testng] 02:03:01,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 02:03:01,601] [main] testng.directory = /data
[testng] [2024-10-12 02:03:01,601] [main] testng.configDirectory = /config
[testng] [2024-10-12 02:03:01,611] [main] testng.multiplier = 1.0
[testng] [2024-10-12 02:03:01,612] [main] testng.in-memory = false
[testng] [2024-10-12 02:03:01,612] [main] testng.allow-missing = false
[testng] [2024-10-12 02:03:01,612] [main] user.language = en
[testng] [2024-10-12 02:03:01,613] [main] user.country = ${user.country}
[testng] [2024-10-12 02:03:01,613] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 02:03:03,827] [main] ----------------------------------------
[testng] [2024-10-12 02:03:03,827] [main] Total files: 21
[testng] [2024-10-12 02:03:03,827] [main] Scan time: 2.214 s (105 ms/file)
[testng] [2024-10-12 02:03:03,828] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 02:03:15,449] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA:
[testng] 02:03:15,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:03:15,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:15,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_02-03-15.log]
[testng] 02:03:15,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ca4d96 - End of configuration.
[testng] [2024-10-12 02:03:15,747] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 02:03:15,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:03:15,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:15,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_02-03-15.log]
[testng] 02:03:15,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d90c5df - End of configuration.
[testng] [2024-10-12 02:03:16,141] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 02:03:16,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:03:16,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:16,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_02-03-16.log]
[testng] 02:03:16,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504ca982 - End of configuration.
[testng] [2024-10-12 02:03:16,688] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA:
[testng] 02:03:16,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:03:16,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:16,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_02-03-16.log]
[testng] 02:03:16,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration.
[testng] [2024-10-12 02:03:17,201] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] 02:03:17,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:03:17,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:17,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_02-03-17.log]
[testng] 02:03:17,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1159b04 - End of configuration.
[testng] [2024-10-12 02:03:17,397] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA:
[testng] 02:03:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:03:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:17,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_02-03-17.log]
[testng] 02:03:17,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration.
[testng] [2024-10-12 02:03:17,741] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA:
[testng] 02:03:17,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:03:17,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:17,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_02-03-17.log]
[testng] 02:03:17,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a57d484 - End of configuration.
[testng] [2024-10-12 02:03:18,201] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 02:03:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:03:18,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:18,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_02-03-18.log]
[testng] 02:03:18,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534c54d - End of configuration.
[testng] [2024-10-12 02:03:18,577] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA:
[testng] 02:03:18,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:03:18,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:18,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_02-03-18.log]
[testng] 02:03:18,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5086bc88 - End of configuration.
[testng] [2024-10-12 02:03:18,785] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 02:03:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:03:18,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:18,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_02-03-18.log]
[testng] 02:03:18,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration.
[testng] [2024-10-12 02:03:18,963] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA:
[testng] 02:03:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:03:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:18,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_02-03-18.log]
[testng] 02:03:18,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50302d11 - End of configuration.
[testng] [2024-10-12 02:03:19,468] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA:
[testng] 02:03:19,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:03:19,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:19,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_02-03-19.log]
[testng] 02:03:19,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration.
[testng] [2024-10-12 02:03:23,622] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA:
[testng] [2024-10-12 02:03:23,929] [pool-1-thread-7] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-10-12 02:03:24,566] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-10-12 02:03:24,885] [pool-1-thread-5] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-10-12 02:03:25,081] [pool-1-thread-9] Initializing /data/samples/UCM8.TGA:
[testng] [2024-10-12 02:03:25,355] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA:
[testng] [2024-10-12 02:03:25,903] [pool-1-thread-1] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-10-12 02:03:26,085] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-10-12 02:03:26,598] [pool-1-thread-2] Initializing /data/samples/UTC24.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS