Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
 Started by upstream project "Trigger" build number 245
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15490917698564105061.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34604_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 03:35:39,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:35:39,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 03:35:39,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:35:39,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:35:39,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:35:39,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:35:39,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:35:39,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:35:39,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:35:39,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:35:39,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:35:39,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:35:39,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:35:39,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:35:39,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:35:39,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:35:39,750 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:35:39,750 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:35:39,750 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:35:39,750 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:35:39,751 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 03:35:39,751 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 03:35:39,751 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-12 03:35:39,760] [main] java.version = 11.0.16
   [testng] 03:35:39,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:35:39,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:35:39,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_03-35-39.log]
   [testng] 03:35:39,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-12 03:35:39,807] [main] testng.directory = /data
   [testng] [2024-10-12 03:35:39,807] [main] testng.configDirectory = /config
   [testng] [2024-10-12 03:35:39,816] [main] testng.multiplier = 1.0
   [testng] [2024-10-12 03:35:39,817] [main] testng.in-memory = false
   [testng] [2024-10-12 03:35:39,817] [main] testng.allow-missing = false
   [testng] [2024-10-12 03:35:39,817] [main] user.language = en
   [testng] [2024-10-12 03:35:39,817] [main] user.country = ${user.country}
   [testng] [2024-10-12 03:35:39,817] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-12 03:35:44,362] [main] ----------------------------------------
   [testng] [2024-10-12 03:35:44,362] [main] Total files: 15
   [testng] [2024-10-12 03:35:44,362] [main] Scan time: 4.545 s (303 ms/file)
   [testng] [2024-10-12 03:35:44,362] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-12 03:36:21,926] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 03:36:21,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:36:21,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:21,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_03-36-21.log]
   [testng] 03:36:21,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31332048 - End of configuration.
   [testng] [2024-10-12 03:36:24,033] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 03:36:24,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:36:24,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:24,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_03-36-24.log]
   [testng] 03:36:24,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174ea5ed - End of configuration.
   [testng] [2024-10-12 03:36:26,017] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 03:36:26,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:36:26,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:26,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_03-36-26.log]
   [testng] 03:36:26,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1234d8 - End of configuration.
   [testng] [2024-10-12 03:36:27,819] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 03:36:27,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:36:27,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:27,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_03-36-27.log]
   [testng] 03:36:27,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c03688 - End of configuration.
   [testng] [2024-10-12 03:36:29,968] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 03:36:29,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:36:29,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:29,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_03-36-29.log]
   [testng] 03:36:29,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55bc63bb - End of configuration.
   [testng] [2024-10-12 03:36:32,277] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 03:36:32,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:36:32,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:32,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_03-36-32.log]
   [testng] 03:36:32,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e4531e - End of configuration.
   [testng] [2024-10-12 03:36:34,923] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 03:36:34,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:36:34,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:34,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_03-36-34.log]
   [testng] 03:36:34,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30d4bd53 - End of configuration.
   [testng] [2024-10-12 03:36:36,713] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 03:36:36,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:36:36,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:36,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_03-36-36.log]
   [testng] 03:36:36,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e08d3e0 - End of configuration.
   [testng] [2024-10-12 03:36:39,509] [pool-1-thread-5] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 03:36:39,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:36:39,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:39,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_03-36-39.log]
   [testng] 03:36:39,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e8a0387 - End of configuration.
   [testng] [2024-10-12 03:36:42,597] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 03:36:42,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:36:42,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:42,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_03-36-42.log]
   [testng] 03:36:42,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c465 - End of configuration.
   [testng] [2024-10-12 03:36:44,969] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 03:36:44,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:36:44,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:44,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_03-36-44.log]
   [testng] 03:36:44,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39fdefc3 - End of configuration.
   [testng] [2024-10-12 03:36:48,010] [pool-1-thread-2] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 03:36:48,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:36:48,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:36:48,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_03-36-48.log]
   [testng] 03:36:48,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bd830f0 - End of configuration.

BUILD SUCCESSFUL
Total time: 2 minutes 10 seconds
Finished: SUCCESS