Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7039858687038128431.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34621_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 05:07:08,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:07:08,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 05:07:08,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:07:08,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:07:08,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:07:08,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:07:08,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:07:08,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:07:08,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:07:08,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:07:08,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:07:08,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:07:08,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:07:08,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:07:08,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:07:08,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:07:08,253 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:07:08,253 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:07:08,254 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:07:08,254 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:07:08,254 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 05:07:08,255 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 05:07:08,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 05:07:08,263] [main] java.version = 11.0.16
[testng] 05:07:08,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:07:08,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:07:08,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_05-07-08.log]
[testng] 05:07:08,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 05:07:08,311] [main] testng.directory = /data
[testng] [2024-10-12 05:07:08,311] [main] testng.configDirectory = /config
[testng] [2024-10-12 05:07:08,320] [main] testng.multiplier = 1.0
[testng] [2024-10-12 05:07:08,321] [main] testng.in-memory = false
[testng] [2024-10-12 05:07:08,321] [main] testng.allow-missing = false
[testng] [2024-10-12 05:07:08,322] [main] user.language = en
[testng] [2024-10-12 05:07:08,322] [main] user.country = ${user.country}
[testng] [2024-10-12 05:07:08,322] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 05:24:28,749] [main] ----------------------------------------
[testng] [2024-10-12 05:24:28,749] [main] Total files: 268
[testng] [2024-10-12 05:24:28,749] [main] Scan time: 1040.427 s (3882 ms/file)
[testng] [2024-10-12 05:24:28,749] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 05:39:45,136] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] 05:39:45,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:39:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:45,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_05-39-45.log]
[testng] 05:39:45,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4238f1fd - End of configuration.
[testng] [2024-10-12 05:39:47,320] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] 05:39:47,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:39:47,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:47,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_05-39-47.log]
[testng] 05:39:47,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9e8d7d - End of configuration.
[testng] [2024-10-12 05:39:48,845] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] 05:39:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:39:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:48,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_05-39-48.log]
[testng] 05:39:48,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b5f3de - End of configuration.
[testng] [2024-10-12 05:39:54,462] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] 05:39:54,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:39:54,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:54,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_05-39-54.log]
[testng] 05:39:54,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7283046c - End of configuration.
[testng] [2024-10-12 05:39:55,848] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] 05:39:55,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:39:55,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:55,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_05-39-55.log]
[testng] 05:39:55,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be434a4 - End of configuration.
[testng] [2024-10-12 05:39:57,634] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] 05:39:57,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:39:57,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:57,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_05-39-57.log]
[testng] 05:39:57,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297eb9c7 - End of configuration.
[testng] [2024-10-12 05:39:59,310] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] 05:39:59,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:39:59,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:39:59,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_05-39-59.log]
[testng] 05:39:59,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration.
[testng] [2024-10-12 05:40:04,659] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 05:40:04,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:40:04,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:40:04,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_05-40-04.log]
[testng] 05:40:04,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14e4aaac - End of configuration.
[testng] [2024-10-12 05:40:06,225] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] 05:40:06,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:40:06,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:40:06,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_05-40-06.log]
[testng] 05:40:06,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1d8265 - End of configuration.
[testng] [2024-10-12 05:40:07,497] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits:
[testng] 05:40:07,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:40:07,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:40:07,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_05-40-07.log]
[testng] 05:40:07,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d9be3f1 - End of configuration.
[testng] [2024-10-12 05:40:07,974] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] 05:40:07,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:40:07,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:40:07,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_05-40-07.log]
[testng] 05:40:07,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c15e3b - End of configuration.
[testng] [2024-10-12 05:40:13,654] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] 05:40:13,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:40:13,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:40:13,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_05-40-13.log]
[testng] 05:40:13,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c517b6 - End of configuration.
[testng] [2024-10-12 05:40:24,883] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-10-12 05:40:30,950] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-10-12 05:40:32,438] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-10-12 05:40:34,658] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-10-12 05:40:41,865] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-10-12 05:40:46,709] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-10-12 05:40:53,075] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-10-12 05:41:06,237] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-10-12 05:41:07,389] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] [2024-10-12 05:41:09,856] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-10-12 05:41:10,768] [pool-1-thread-6] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-10-12 05:41:16,309] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-10-12 05:41:20,866] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-10-12 05:41:27,056] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-10-12 05:41:29,761] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-10-12 05:41:39,903] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-10-12 05:41:42,141] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-10-12 05:41:45,308] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-10-12 05:41:50,952] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-10-12 05:41:52,801] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-10-12 05:41:59,105] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-10-12 05:42:00,132] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-10-12 05:42:05,352] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-10-12 05:42:08,806] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-10-12 05:42:10,334] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-10-12 05:42:13,692] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-10-12 05:42:16,680] [pool-1-thread-6] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-10-12 05:42:19,460] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-10-12 05:42:25,219] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-10-12 05:42:27,138] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-10-12 05:42:28,917] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-10-12 05:42:33,933] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-10-12 05:42:40,599] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-10-12 05:42:42,892] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 M 40s:
[testng] [2024-10-12 05:42:55,409] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-10-12 05:43:04,296] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-10-12 05:43:06,311] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-10-12 05:43:07,869] [pool-1-thread-8] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-10-12 05:43:13,865] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-10-12 05:43:16,651] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-10-12 05:43:19,323] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-10-12 05:43:25,558] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-10-12 05:43:31,261] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-10-12 05:43:34,514] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-10-12 05:43:36,542] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-10-12 05:43:42,673] [pool-1-thread-7] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-10-12 05:43:43,737] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-10-12 05:43:52,107] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-10-12 05:43:59,593] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-10-12 05:44:07,074] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-10-12 05:44:16,496] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-10-12 05:44:19,776] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-10-12 05:44:22,005] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-10-12 05:44:29,269] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-10-12 05:44:36,618] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-10-12 05:44:39,786] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-10-12 05:44:41,824] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-10-12 05:44:44,314] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-10-12 05:44:48,917] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-10-12 05:44:50,372] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-10-12 05:44:51,323] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-10-12 05:44:53,626] [pool-1-thread-12] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-10-12 05:45:01,385] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-10-12 05:45:05,478] [pool-1-thread-5] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-10-12 05:45:13,024] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-10-12 05:45:14,363] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-10-12 05:45:22,230] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-10-12 05:45:24,083] [pool-1-thread-9] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-10-12 05:45:24,837] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-10-12 05:45:26,676] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-10-12 05:45:28,987] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-10-12 05:45:30,425] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-10-12 05:45:33,335] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-10-12 05:45:33,825] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-10-12 05:45:39,157] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-10-12 05:45:48,124] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-10-12 05:45:53,227] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-10-12 05:45:55,932] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-10-12 05:46:01,697] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-10-12 05:46:03,787] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-10-12 05:46:04,691] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-10-12 05:46:07,425] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-10-12 05:46:08,810] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-10-12 05:46:10,367] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-10-12 05:46:15,132] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-10-12 05:46:20,666] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-10-12 05:46:23,631] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-10-12 05:46:25,755] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-10-12 05:46:31,405] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-10-12 05:46:34,146] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-10-12 05:46:35,167] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-10-12 05:46:35,390] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-10-12 05:46:37,605] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-10-12 05:46:45,055] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-10-12 05:46:46,580] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-10-12 05:46:48,001] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-10-12 05:46:49,783] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] [2024-10-12 05:46:51,207] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-10-12 05:46:54,094] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-10-12 05:46:54,568] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-10-12 05:46:57,649] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-10-12 05:46:59,751] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-10-12 05:47:03,629] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-10-12 05:47:09,350] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-10-12 05:47:14,807] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-10-12 05:47:18,535] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-10-12 05:47:21,212] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-10-12 05:47:22,904] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-10-12 05:47:24,913] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-10-12 05:47:26,949] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-10-12 05:47:28,595] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] [2024-10-12 05:47:30,427] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-10-12 05:47:35,442] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-10-12 05:47:40,054] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-10-12 05:47:43,718] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-10-12 05:47:49,033] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-10-12 05:47:51,899] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-10-12 05:47:57,408] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-10-12 05:47:59,482] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-10-12 05:48:01,468] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-10-12 05:48:02,631] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-10-12 05:48:05,741] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-10-12 05:48:07,886] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-10-12 05:48:13,767] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-10-12 05:48:15,775] [pool-1-thread-5] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-10-12 05:48:23,088] [pool-1-thread-7] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-10-12 05:48:27,884] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-10-12 05:48:29,279] [pool-1-thread-6] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-10-12 05:48:31,848] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-10-12 05:48:32,561] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-10-12 05:48:33,836] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-10-12 05:48:35,580] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-10-12 05:48:37,224] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-10-12 05:48:38,857] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-10-12 05:48:42,548] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-10-12 05:48:49,518] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-10-12 05:48:50,774] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] [2024-10-12 05:48:55,046] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-10-12 05:48:56,539] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] [2024-10-12 05:48:57,900] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-10-12 05:48:59,603] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-10-12 05:49:00,834] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-10-12 05:49:03,100] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-10-12 05:49:05,569] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-10-12 05:49:07,019] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-10-12 05:49:08,564] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-10-12 05:49:15,566] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-10-12 05:49:19,966] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 minutes 29 seconds
Finished: SUCCESS