Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11013914969095590892.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34631_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 07:18:17,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:18:17,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:18:17,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:18:17,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:18:17,838 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:18:17,838 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:18:17,838 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:18:17,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:18:17,839 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration.
[testng] 07:18:17,840 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point
[testng] 07:18:17,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 835 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 07:18:17,848] [main] java.version = 11.0.16
[testng] 07:18:17,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:18:17,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:17,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_07-18-17.log]
[testng] 07:18:17,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 07:18:17,944] [main] testng.directory = /data
[testng] [2024-10-12 07:18:17,944] [main] testng.configDirectory = /config
[testng] [2024-10-12 07:18:17,954] [main] testng.multiplier = 1.0
[testng] [2024-10-12 07:18:17,955] [main] testng.in-memory = false
[testng] [2024-10-12 07:18:17,955] [main] testng.allow-missing = false
[testng] [2024-10-12 07:18:17,955] [main] user.language = en
[testng] [2024-10-12 07:18:17,955] [main] user.country = ${user.country}
[testng] [2024-10-12 07:18:17,955] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 07:18:21,601] [main] ----------------------------------------
[testng] [2024-10-12 07:18:21,601] [main] Total files: 14
[testng] [2024-10-12 07:18:21,601] [main] Scan time: 3.646 s (260 ms/file)
[testng] [2024-10-12 07:18:21,601] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 07:18:42,666] [pool-1-thread-1] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 07:18:42,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:18:42,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:42,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_07-18-42.log]
[testng] 07:18:42,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cb0528 - End of configuration.
[testng] [2024-10-12 07:18:43,819] [pool-1-thread-12] Initializing /data/timg/eric-three-projection.tif:
[testng] 07:18:43,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:18:43,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:43,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_07-18-43.log]
[testng] 07:18:43,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bf2783e - End of configuration.
[testng] [2024-10-12 07:18:44,656] [pool-1-thread-11] Initializing /data/timg/eric-one-3d.tif:
[testng] 07:18:44,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:18:44,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:44,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_07-18-44.log]
[testng] 07:18:44,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50edd8b4 - End of configuration.
[testng] [2024-10-12 07:18:45,544] [pool-1-thread-10] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 07:18:45,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:18:45,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:45,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_07-18-45.log]
[testng] 07:18:45,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7702195c - End of configuration.
[testng] [2024-10-12 07:18:46,445] [pool-1-thread-9] Initializing /data/timg/LiveTwo.tif:
[testng] 07:18:46,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:18:46,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:46,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_07-18-46.log]
[testng] 07:18:46,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326f7fa - End of configuration.
[testng] [2024-10-12 07:18:47,468] [pool-1-thread-8] Initializing /data/aaron/olympus_fv500.tif:
[testng] 07:18:47,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:18:47,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:47,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_07-18-47.log]
[testng] 07:18:47,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f971596 - End of configuration.
[testng] [2024-10-12 07:18:48,676] [pool-1-thread-7] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 07:18:48,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:18:48,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:48,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_07-18-48.log]
[testng] 07:18:48,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a167a3 - End of configuration.
[testng] [2024-10-12 07:18:49,688] [pool-1-thread-6] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 07:18:49,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:18:49,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:49,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_07-18-49.log]
[testng] 07:18:49,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b58e326 - End of configuration.
[testng] [2024-10-12 07:18:50,706] [pool-1-thread-5] Initializing /data/timg/LiveOne.tif:
[testng] 07:18:50,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:18:50,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:50,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_07-18-50.log]
[testng] 07:18:50,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c05f47a - End of configuration.
[testng] [2024-10-12 07:18:51,632] [pool-1-thread-4] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 07:18:51,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:18:51,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:51,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_07-18-51.log]
[testng] 07:18:51,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39455cc8 - End of configuration.
[testng] [2024-10-12 07:18:52,660] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 07:18:52,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:18:52,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:52,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_07-18-52.log]
[testng] 07:18:52,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c0c053 - End of configuration.
[testng] [2024-10-12 07:18:54,331] [pool-1-thread-2] Initializing /data/timg/eric-three.tif:
[testng] 07:18:54,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:18:54,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:54,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_07-18-54.log]
[testng] 07:18:54,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa03425 - End of configuration.
[testng] [2024-10-12 07:19:02,392] [pool-1-thread-5] Initializing /data/timg/eric-one.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS