Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
Started by upstream project "Trigger" build number 245
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins11970355069054887407.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34665_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 08:18:02,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 08:18:02,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 08:18:02,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:18:02,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 08:18:02,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 08:18:02,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 08:18:02,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 08:18:02,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:18:02,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 08:18:02,391 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 08:18:02,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 08:18:02,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 08:18:02,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 08:18:02,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 08:18:02,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 08:18:02,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 08:18:02,590 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 08:18:02,590 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 08:18:02,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 08:18:02,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 08:18:02,591 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 08:18:02,591 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 08:18:02,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-12 08:18:02,600] [main] java.version = 11.0.16
[testng] 08:18:02,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:18:02,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:02,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_08-18-02.log]
[testng] 08:18:02,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-12 08:18:02,648] [main] testng.directory = /data
[testng] [2024-10-12 08:18:02,648] [main] testng.configDirectory = /config
[testng] [2024-10-12 08:18:02,658] [main] testng.multiplier = 1.0
[testng] [2024-10-12 08:18:02,659] [main] testng.in-memory = false
[testng] [2024-10-12 08:18:02,659] [main] testng.allow-missing = false
[testng] [2024-10-12 08:18:02,659] [main] user.language = en
[testng] [2024-10-12 08:18:02,659] [main] user.country = ${user.country}
[testng] [2024-10-12 08:18:02,659] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-12 08:18:03,750] [main] ----------------------------------------
[testng] [2024-10-12 08:18:03,750] [main] Total files: 18
[testng] [2024-10-12 08:18:03,750] [main] Scan time: 1.091 s (60 ms/file)
[testng] [2024-10-12 08:18:03,751] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-12 08:18:11,705] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd:
[testng] 08:18:11,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 08:18:11,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:11,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_08-18-11.log]
[testng] 08:18:11,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c59d800 - End of configuration.
[testng] [2024-10-12 08:18:11,999] [pool-1-thread-12] Initializing /data/misc/glossy_orbs.psd:
[testng] 08:18:11,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 08:18:11,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:12,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_08-18-12.log]
[testng] 08:18:12,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a0d5fb - End of configuration.
[testng] [2024-10-12 08:18:12,396] [pool-1-thread-11] Initializing /data/ascb/607x.psd:
[testng] 08:18:12,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 08:18:12,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:12,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_08-18-12.log]
[testng] 08:18:12,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f8af9f - End of configuration.
[testng] [2024-10-12 08:18:12,725] [pool-1-thread-10] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 08:18:12,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 08:18:12,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:12,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_08-18-12.log]
[testng] 08:18:12,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1e8179 - End of configuration.
[testng] [2024-10-12 08:18:13,129] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 08:18:13,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 08:18:13,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:13,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_08-18-13.log]
[testng] 08:18:13,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc12d6 - End of configuration.
[testng] [2024-10-12 08:18:13,419] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd:
[testng] 08:18:13,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 08:18:13,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:13,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_08-18-13.log]
[testng] 08:18:13,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5726210a - End of configuration.
[testng] [2024-10-12 08:18:13,717] [pool-1-thread-7] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 08:18:13,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 08:18:13,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:13,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_08-18-13.log]
[testng] 08:18:13,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25cfd5c4 - End of configuration.
[testng] [2024-10-12 08:18:14,026] [pool-1-thread-6] Initializing /data/misc/smilie.psd:
[testng] 08:18:14,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 08:18:14,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:14,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_08-18-14.log]
[testng] 08:18:14,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71be4d8d - End of configuration.
[testng] [2024-10-12 08:18:14,321] [pool-1-thread-5] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 08:18:14,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 08:18:14,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:14,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_08-18-14.log]
[testng] 08:18:14,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59d1f676 - End of configuration.
[testng] [2024-10-12 08:18:14,632] [pool-1-thread-4] Initializing /data/cris/house.tif:
[testng] 08:18:14,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 08:18:14,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:14,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_08-18-14.log]
[testng] 08:18:14,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ffe3ae - End of configuration.
[testng] [2024-10-12 08:18:15,606] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 08:18:15,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 08:18:15,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:15,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_08-18-15.log]
[testng] 08:18:15,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a9073e7 - End of configuration.
[testng] [2024-10-12 08:18:15,952] [pool-1-thread-2] Initializing /data/misc/glossy_buttons.psd:
[testng] 08:18:15,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 08:18:15,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:18:15,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_08-18-15.log]
[testng] 08:18:15,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21202376 - End of configuration.
[testng] [2024-10-12 08:18:19,904] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd:
[testng] [2024-10-12 08:18:20,231] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd:
[testng] [2024-10-12 08:18:20,577] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] [2024-10-12 08:18:20,940] [pool-1-thread-5] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] [2024-10-12 08:18:21,241] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd:
[testng] [2024-10-12 08:18:21,565] [pool-1-thread-10] Initializing /data/ascb/423.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 36 seconds
Finished: SUCCESS