Started by upstream project "BIOFORMATS-test-repo" build number 218
originally caused by:
 Started by upstream project "Trigger" build number 245
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15773525010565460700.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34675_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 08:32:23,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 08:32:23,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 08:32:23,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:32:23,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:32:23,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 08:32:23,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 08:32:23,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 08:32:23,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:32:23,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:32:23,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 08:32:23,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 08:32:23,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 08:32:23,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 08:32:23,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 08:32:23,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 08:32:23,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 08:32:23,448 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 08:32:23,448 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 08:32:23,448 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 08:32:23,449 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 08:32:23,449 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 08:32:23,450 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 08:32:23,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-12 08:32:23,459] [main] java.version = 11.0.16
   [testng] 08:32:23,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 08:32:23,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:32:23,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_08-32-23.log]
   [testng] 08:32:23,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-12 08:32:23,508] [main] testng.directory = /data
   [testng] [2024-10-12 08:32:23,509] [main] testng.configDirectory = /config
   [testng] [2024-10-12 08:32:23,520] [main] testng.multiplier = 1.0
   [testng] [2024-10-12 08:32:23,521] [main] testng.in-memory = false
   [testng] [2024-10-12 08:32:23,521] [main] testng.allow-missing = false
   [testng] [2024-10-12 08:32:23,521] [main] user.language = en
   [testng] [2024-10-12 08:32:23,521] [main] user.country = ${user.country}
   [testng] [2024-10-12 08:32:23,521] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-12 08:32:50,485] [main] ----------------------------------------
   [testng] [2024-10-12 08:32:50,485] [main] Total files: 944
   [testng] [2024-10-12 08:32:50,485] [main] Scan time: 26.964 s (28 ms/file)
   [testng] [2024-10-12 08:32:50,485] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-12 08:34:19,875] [pool-1-thread-1] Initializing /data/primate/Leica_Image.tif: 
   [testng] 08:34:19,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 08:34:19,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:34:19,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-12_08-34-19.log]
   [testng] 08:34:19,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c0eb1b - End of configuration.
   [testng] [2024-10-12 08:34:21,010] [pool-1-thread-12] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 08:34:21,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 08:34:21,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:34:21,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-12_08-34-21.log]
   [testng] 08:34:21,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174632d0 - End of configuration.
   [testng] [2024-10-12 08:34:22,176] [pool-1-thread-11] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 08:34:22,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 08:34:22,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:34:22,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-12_08-34-22.log]
   [testng] 08:34:22,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1b70ce - End of configuration.
   [testng] [2024-10-12 08:35:10,122] [pool-1-thread-10] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 08:35:10,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 08:35:10,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:10,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-12_08-35-10.log]
   [testng] 08:35:10,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11248638 - End of configuration.
   [testng] [2024-10-12 08:35:11,898] [pool-1-thread-9] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 08:35:11,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 08:35:11,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:11,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-12_08-35-11.log]
   [testng] 08:35:11,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f627d58 - End of configuration.
   [testng] [2024-10-12 08:35:13,416] [pool-1-thread-8] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 08:35:13,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 08:35:13,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:13,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-12_08-35-13.log]
   [testng] 08:35:13,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462ae941 - End of configuration.
   [testng] [2024-10-12 08:35:14,780] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 08:35:14,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 08:35:14,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:14,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-12_08-35-14.log]
   [testng] 08:35:14,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d003eef - End of configuration.
   [testng] [2024-10-12 08:35:16,093] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 08:35:16,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 08:35:16,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:16,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-12_08-35-16.log]
   [testng] 08:35:16,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27efc7a3 - End of configuration.
   [testng] [2024-10-12 08:35:17,421] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 08:35:17,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 08:35:17,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:17,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-12_08-35-17.log]
   [testng] 08:35:17,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ae7556 - End of configuration.
   [testng] [2024-10-12 08:35:18,727] [pool-1-thread-4] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 08:35:18,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 08:35:18,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:18,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-12_08-35-18.log]
   [testng] 08:35:18,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b4be7b - End of configuration.
   [testng] [2024-10-12 08:35:20,213] [pool-1-thread-3] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 08:35:20,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 08:35:20,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:20,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-12_08-35-20.log]
   [testng] 08:35:20,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d89179 - End of configuration.
   [testng] [2024-10-12 08:35:21,445] [pool-1-thread-2] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 08:35:21,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 08:35:21,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:21,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-12_08-35-21.log]
   [testng] 08:35:21,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a7403c7 - End of configuration.
   [testng] [2024-10-12 08:35:31,773] [pool-1-thread-3] Initializing /data/brian/Series002_z01.tif: 
   [testng] [2024-10-12 08:35:34,116] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] [2024-10-12 08:35:39,876] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 13:36:59,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 13:36:59,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:36:59,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-12_13-36-59.log]
   [testng] 13:36:59,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d33f4 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 304 minutes 40 seconds
Finished: SUCCESS