Started by upstream project "BIOFORMATS-test-repo" build number 219
originally caused by:
Started by upstream project "Trigger" build number 246
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10505139278241863282.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34707_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:20:49,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:20:49,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:20:49,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:49,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:49,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:20:49,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:20:49,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:20:49,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:49,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:49,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:20:49,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:20:49,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:20:49,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:20:49,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:20:49,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:20:49,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:20:49,449 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:20:49,449 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:20:49,450 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:20:49,450 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:20:49,450 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:20:49,451 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:20:49,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-13 01:20:49,460] [main] java.version = 17.0.2
[testng] 01:20:49,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:20:49,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:49,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_01-20-49.log]
[testng] 01:20:49,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-13 01:20:49,508] [main] testng.directory = /data
[testng] [2024-10-13 01:20:49,509] [main] testng.configDirectory = /config
[testng] [2024-10-13 01:20:49,517] [main] testng.multiplier = 1.0
[testng] [2024-10-13 01:20:49,518] [main] testng.in-memory = false
[testng] [2024-10-13 01:20:49,519] [main] testng.allow-missing = false
[testng] [2024-10-13 01:20:49,519] [main] user.language = en
[testng] [2024-10-13 01:20:49,519] [main] user.country = ${user.country}
[testng] [2024-10-13 01:20:49,519] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-13 01:21:14,726] [main] ----------------------------------------
[testng] [2024-10-13 01:21:14,726] [main] Total files: 315
[testng] [2024-10-13 01:21:14,727] [main] Scan time: 25.207 s (80 ms/file)
[testng] [2024-10-13 01:21:14,727] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-13 01:35:32,406] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] 01:35:32,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:35:32,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:32,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_01-35-32.log]
[testng] 01:35:32,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2327424 - End of configuration.
[testng] [2024-10-13 01:35:32,881] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] 01:35:32,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:35:32,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:32,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_01-35-32.log]
[testng] 01:35:32,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@94ff780 - End of configuration.
[testng] [2024-10-13 01:35:33,623] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir:
[testng] 01:35:33,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:35:33,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:33,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_01-35-33.log]
[testng] 01:35:33,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bff5460 - End of configuration.
[testng] [2024-10-13 01:35:34,459] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] 01:35:34,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:35:34,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:34,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_01-35-34.log]
[testng] 01:35:34,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5340edd3 - End of configuration.
[testng] [2024-10-13 01:35:35,016] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] 01:35:35,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:35:35,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:35,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_01-35-35.log]
[testng] 01:35:35,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e9dec2 - End of configuration.
[testng] [2024-10-13 01:35:36,384] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] 01:35:36,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:35:36,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:36,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_01-35-36.log]
[testng] 01:35:36,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65a48186 - End of configuration.
[testng] [2024-10-13 01:35:37,589] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] 01:35:37,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:35:37,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:37,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_01-35-37.log]
[testng] 01:35:37,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410c0ff0 - End of configuration.
[testng] [2024-10-13 01:35:38,122] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] 01:35:38,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:35:38,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:38,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_01-35-38.log]
[testng] 01:35:38,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3b94c - End of configuration.
[testng] [2024-10-13 01:35:38,874] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] 01:35:38,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:35:38,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:38,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_01-35-38.log]
[testng] 01:35:38,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e045746 - End of configuration.
[testng] [2024-10-13 01:35:39,632] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] 01:35:39,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:35:39,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:39,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_01-35-39.log]
[testng] 01:35:39,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4722859a - End of configuration.
[testng] [2024-10-13 01:35:40,379] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] 01:35:40,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:35:40,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:40,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_01-35-40.log]
[testng] 01:35:40,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@474c4858 - End of configuration.
[testng] [2024-10-13 01:35:40,995] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir:
[testng] 01:35:40,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:35:40,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:40,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_01-35-40.log]
[testng] 01:35:40,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@659063e0 - End of configuration.
[testng] [2024-10-13 01:36:11,671] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-13 01:36:12,323] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-13 01:36:13,992] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-13 01:36:14,926] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-13 01:36:16,261] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-13 01:36:16,934] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-13 01:36:18,080] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-13 01:36:18,751] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-13 01:36:19,764] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-13 01:36:24,733] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-13 01:36:26,404] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-13 01:36:27,376] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-13 01:36:28,337] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-13 01:36:29,306] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-13 01:36:30,934] [pool-1-thread-5] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-13 01:36:32,307] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-13 01:36:32,919] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-13 01:36:33,629] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-13 01:36:34,093] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-13 01:36:34,814] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-13 01:36:38,464] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-13 01:36:39,700] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-13 01:36:41,786] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-13 01:36:43,044] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-13 01:36:44,764] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-13 01:36:45,343] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-13 01:36:46,040] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-13 01:36:46,577] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-13 01:36:50,050] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-13 01:36:50,925] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-13 01:36:51,720] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-13 01:36:52,463] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-13 01:36:53,743] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-13 01:36:55,255] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-13 01:36:56,841] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-13 01:36:58,865] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-13 01:37:00,465] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-13 01:37:01,861] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-13 01:37:03,116] [pool-1-thread-4] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-13 01:37:03,893] [pool-1-thread-1] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-13 01:37:05,879] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-13 01:37:09,505] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-13 01:37:10,668] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-13 01:37:11,351] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-13 01:37:15,430] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-13 01:37:16,341] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-13 01:37:16,893] [pool-1-thread-1] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-13 01:37:17,328] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-13 01:37:18,264] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-13 01:37:22,134] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-13 01:37:23,267] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-13 01:37:24,112] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-13 01:37:24,895] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-13 01:37:25,547] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-13 01:37:26,287] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-13 01:37:29,583] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-13 01:37:30,794] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-13 01:37:31,879] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-13 01:37:33,086] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-13 01:37:35,325] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-13 01:37:36,704] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-13 01:37:37,343] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-13 01:37:38,791] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-13 01:37:40,035] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-13 01:37:45,066] [pool-1-thread-1] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-13 01:37:45,419] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-13 01:37:46,033] [pool-1-thread-12] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-13 01:37:47,235] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-13 01:37:47,719] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-13 01:37:48,359] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-13 01:37:48,971] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-13 01:37:52,199] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-13 01:37:53,868] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-13 01:37:55,492] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-13 01:37:58,077] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-13 01:37:59,731] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-13 01:38:00,816] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-13 01:38:01,525] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-13 01:38:03,712] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-13 01:38:05,194] [pool-1-thread-1] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-13 01:38:05,696] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-13 01:38:06,873] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-13 01:38:13,398] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-13 01:38:14,154] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-13 01:38:15,030] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-13 01:38:16,873] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-13 01:38:17,765] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-13 01:38:19,508] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-13 01:38:21,795] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-13 01:38:22,551] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-13 01:38:25,755] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-13 01:38:29,176] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-13 01:38:33,252] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-13 01:38:34,478] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-13 01:38:35,349] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-13 01:38:36,727] [pool-1-thread-7] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-13 01:38:39,152] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-13 01:38:41,664] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-13 01:38:43,826] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-13 01:38:44,490] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-13 01:38:45,661] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-13 01:38:46,344] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-13 01:38:50,883] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-13 01:38:51,519] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-10-13 01:38:52,368] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-13 01:38:53,249] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-13 01:39:45,236] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-13 01:39:46,489] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-13 01:39:47,185] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-13 01:39:48,929] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-13 01:39:56,921] [pool-1-thread-1] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-13 01:39:58,210] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-13 01:39:59,422] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-10-13 01:40:01,398] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-13 01:40:03,593] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-13 01:40:06,065] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-13 01:40:11,578] [pool-1-thread-3] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-13 01:40:31,163] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-13 01:40:32,654] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-13 01:40:34,891] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-10-13 01:40:36,140] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-13 01:40:39,074] [pool-1-thread-7] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-13 01:40:42,314] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-13 01:40:44,255] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-13 01:40:48,260] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-13 01:40:50,014] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-13 01:40:50,815] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-13 01:40:54,508] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-13 01:40:55,003] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-13 01:40:55,858] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-13 01:40:56,691] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-13 01:41:01,063] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-13 01:41:03,225] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-13 01:41:04,746] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-10-13 01:41:06,640] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-13 01:41:07,740] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-13 01:41:08,791] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-13 01:41:14,438] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-13 01:41:15,940] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-13 01:41:16,668] [pool-1-thread-2] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-13 01:41:17,671] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-13 01:41:22,250] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-13 01:41:22,920] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-13 01:41:23,629] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-13 01:41:24,296] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-13 01:41:27,267] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-13 01:41:28,750] [pool-1-thread-11] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-13 01:41:34,140] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-13 01:41:35,760] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-13 01:41:36,627] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-13 01:41:39,093] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-13 01:41:41,829] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-13 01:41:44,802] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-13 01:41:45,584] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-13 01:41:46,209] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-13 01:41:50,442] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-13 01:41:53,435] [pool-1-thread-5] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-13 01:42:26,494] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-13 01:42:27,469] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-13 01:42:30,855] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-13 01:42:33,536] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-13 01:42:37,312] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-13 01:42:39,838] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-13 01:42:44,009] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-13 01:42:46,569] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-13 01:42:48,110] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-13 01:42:55,564] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-13 01:42:59,750] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-13 01:43:01,838] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-13 01:43:02,911] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-13 01:43:06,861] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-13 01:43:07,483] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-13 01:43:10,379] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-13 01:43:13,059] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-13 01:43:19,219] [pool-1-thread-6] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-13 01:43:23,674] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-13 01:43:25,745] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-13 01:43:39,021] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-13 01:43:41,303] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-10-13 01:43:42,326] [pool-1-thread-3] Initializing /data/qa-17335/1.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 54 minutes 35 seconds
Finished: SUCCESS