Started by upstream project "BIOFORMATS-test-repo" build number 219
originally caused by:
 Started by upstream project "Trigger" build number 246
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins5988332850778512148.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34756_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:16:24,883 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:16:24,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 02:16:24,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:16:24,885 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:16:24,886 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:16:24,886 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:16:24,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:16:24,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:16:24,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:16:24,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:16:24,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:16:24,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:16:25,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:16:25,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:16:25,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:16:25,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:16:25,110 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:16:25,110 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:16:25,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:16:25,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:16:25,111 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 02:16:25,112 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 02:16:25,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 225 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-13 02:16:25,121] [main] java.version = 17.0.2
   [testng] 02:16:25,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:16:25,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:25,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_02-16-25.log]
   [testng] 02:16:25,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-13 02:16:25,186] [main] testng.directory = /data
   [testng] [2024-10-13 02:16:25,187] [main] testng.configDirectory = /config
   [testng] [2024-10-13 02:16:25,195] [main] testng.multiplier = 1.0
   [testng] [2024-10-13 02:16:25,196] [main] testng.in-memory = false
   [testng] [2024-10-13 02:16:25,196] [main] testng.allow-missing = false
   [testng] [2024-10-13 02:16:25,196] [main] user.language = en
   [testng] [2024-10-13 02:16:25,196] [main] user.country = ${user.country}
   [testng] [2024-10-13 02:16:25,196] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-13 02:16:37,420] [main] ----------------------------------------
   [testng] [2024-10-13 02:16:37,420] [main] Total files: 20
   [testng] [2024-10-13 02:16:37,420] [main] Scan time: 12.224 s (611 ms/file)
   [testng] [2024-10-13 02:16:37,420] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-13 02:16:49,425] [pool-1-thread-1] Initializing /data/dan/one.mrc: 
   [testng] 02:16:49,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:16:49,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:49,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_02-16-49.log]
   [testng] 02:16:49,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c9a204b - End of configuration.
   [testng] [2024-10-13 02:16:49,889] [pool-1-thread-12] Initializing /data/samples/1160.mrc: 
   [testng] 02:16:49,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:16:49,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:49,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_02-16-49.log]
   [testng] 02:16:49,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e31cb29 - End of configuration.
   [testng] [2024-10-13 02:16:50,415] [pool-1-thread-11] Initializing /data/ascb/c191ali.mrc: 
   [testng] 02:16:50,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:16:50,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:50,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_02-16-50.log]
   [testng] 02:16:50,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a43bc67 - End of configuration.
   [testng] [2024-10-13 02:16:51,472] [pool-1-thread-10] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 02:16:51,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:16:51,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:51,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_02-16-51.log]
   [testng] 02:16:51,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678253fa - End of configuration.
   [testng] [2024-10-13 02:16:52,201] [pool-1-thread-9] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 02:16:52,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:16:52,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:52,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_02-16-52.log]
   [testng] 02:16:52,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@528b6fee - End of configuration.
   [testng] [2024-10-13 02:16:53,347] [pool-1-thread-8] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] 02:16:53,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:16:53,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:53,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_02-16-53.log]
   [testng] 02:16:53,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3710da - End of configuration.
   [testng] [2024-10-13 02:16:53,818] [pool-1-thread-7] Initializing /data/jcb/thylakoid5.rec: 
   [testng] 02:16:53,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:16:53,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:53,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_02-16-53.log]
   [testng] 02:16:53,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e206dd - End of configuration.
   [testng] [2024-10-13 02:16:54,159] [pool-1-thread-6] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 02:16:54,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:16:54,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:54,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_02-16-54.log]
   [testng] 02:16:54,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0165b7 - End of configuration.
   [testng] [2024-10-13 02:16:54,612] [pool-1-thread-5] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] 02:16:54,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:16:54,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:54,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_02-16-54.log]
   [testng] 02:16:54,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a49712d - End of configuration.
   [testng] [2024-10-13 02:16:55,147] [pool-1-thread-4] Initializing /data/dan/three.mrc: 
   [testng] 02:16:55,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:16:55,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:55,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_02-16-55.log]
   [testng] 02:16:55,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34aaa8c2 - End of configuration.
   [testng] [2024-10-13 02:16:55,713] [pool-1-thread-3] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 02:16:55,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:16:55,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:55,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_02-16-55.log]
   [testng] 02:16:55,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1e8179 - End of configuration.
   [testng] [2024-10-13 02:16:56,125] [pool-1-thread-2] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 02:16:56,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:16:56,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:56,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_02-16-56.log]
   [testng] 02:16:56,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc12d6 - End of configuration.
   [testng] [2024-10-13 02:17:02,166] [pool-1-thread-5] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] [2024-10-13 02:17:02,610] [pool-1-thread-9] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] [2024-10-13 02:17:03,004] [pool-1-thread-10] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] [2024-10-13 02:17:03,465] [pool-1-thread-2] Initializing /data/samples/golgi.mrc: 
   [testng] [2024-10-13 02:17:04,137] [pool-1-thread-6] Initializing /data/ascb/c191.st: 
   [testng] [2024-10-13 02:17:04,550] [pool-1-thread-11] Initializing /data/dan/two.mrc: 
   [testng] [2024-10-13 02:17:04,932] [pool-1-thread-7] Initializing /data/ascb/514_9903.mrc: 
   [testng] [2024-10-13 02:17:05,434] [pool-1-thread-1] Initializing /data/strand/Series1_A.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 51 seconds
Finished: SUCCESS