Started by upstream project "BIOFORMATS-test-repo" build number 219
originally caused by:
Started by upstream project "Trigger" build number 246
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2344455061508493510.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34768_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:55:37,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:55:37,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 02:55:37,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:55:37,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:55:37,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:55:37,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:55:37,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:55:37,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:55:37,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:55:37,676 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:55:37,676 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:55:37,676 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:55:37,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:55:37,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:55:37,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:55:37,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:55:37,862 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:55:37,862 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:55:37,862 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:55:37,863 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:55:37,863 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 02:55:37,863 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 02:55:37,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-13 02:55:37,872] [main] java.version = 17.0.2
[testng] 02:55:37,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:55:37,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:37,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_02-55-37.log]
[testng] 02:55:37,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-13 02:55:37,917] [main] testng.directory = /data
[testng] [2024-10-13 02:55:37,918] [main] testng.configDirectory = /config
[testng] [2024-10-13 02:55:37,927] [main] testng.multiplier = 1.0
[testng] [2024-10-13 02:55:37,927] [main] testng.in-memory = false
[testng] [2024-10-13 02:55:37,927] [main] testng.allow-missing = false
[testng] [2024-10-13 02:55:37,927] [main] user.language = en
[testng] [2024-10-13 02:55:37,927] [main] user.country = ${user.country}
[testng] [2024-10-13 02:55:37,928] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-13 02:55:38,910] [main] ----------------------------------------
[testng] [2024-10-13 02:55:38,911] [main] Total files: 15
[testng] [2024-10-13 02:55:38,911] [main] Scan time: 0.982 s (65 ms/file)
[testng] [2024-10-13 02:55:38,911] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-13 02:55:52,467] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 02:55:52,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:55:52,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:52,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_02-55-52.log]
[testng] 02:55:52,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56e531e0 - End of configuration.
[testng] [2024-10-13 02:55:52,928] [pool-1-thread-12] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc:
[testng] 02:55:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:55:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:52,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_02-55-52.log]
[testng] 02:55:52,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23fd0661 - End of configuration.
[testng] [2024-10-13 02:55:54,447] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 02:55:54,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:55:54,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:54,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_02-55-54.log]
[testng] 02:55:54,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f2335d - End of configuration.
[testng] [2024-10-13 02:55:54,968] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc:
[testng] 02:55:54,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:55:54,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:54,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_02-55-54.log]
[testng] 02:55:54,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b152e67 - End of configuration.
[testng] [2024-10-13 02:55:55,420] [pool-1-thread-9] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 02:55:55,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:55:55,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:55,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_02-55-55.log]
[testng] 02:55:55,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2be6ed7a - End of configuration.
[testng] [2024-10-13 02:55:56,576] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 02:55:56,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:55:56,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:56,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_02-55-56.log]
[testng] 02:55:56,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ae44ede - End of configuration.
[testng] [2024-10-13 02:55:57,128] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc:
[testng] 02:55:57,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:55:57,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:57,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_02-55-57.log]
[testng] 02:55:57,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d88d6f5 - End of configuration.
[testng] [2024-10-13 02:55:57,660] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 02:55:57,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:55:57,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:57,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_02-55-57.log]
[testng] 02:55:57,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a83e5d - End of configuration.
[testng] [2024-10-13 02:55:58,150] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc:
[testng] 02:55:58,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:55:58,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:58,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_02-55-58.log]
[testng] 02:55:58,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d0b6da - End of configuration.
[testng] [2024-10-13 02:55:58,622] [pool-1-thread-4] Initializing /data/samples/N3/average_305_mask_1mm.mnc:
[testng] 02:55:58,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:55:58,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:58,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_02-55-58.log]
[testng] 02:55:58,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e3881e - End of configuration.
[testng] [2024-10-13 02:55:59,132] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 02:55:59,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:55:59,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:59,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_02-55-59.log]
[testng] 02:55:59,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@356d9cc3 - End of configuration.
[testng] [2024-10-13 02:55:59,661] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc:
[testng] 02:55:59,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:55:59,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:55:59,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_02-55-59.log]
[testng] 02:55:59,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47242532 - End of configuration.
BUILD SUCCESSFUL
Total time: 53 seconds
Finished: SUCCESS