Started by upstream project "BIOFORMATS-test-repo" build number 219
originally caused by:
Started by upstream project "Trigger" build number 246
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9130561543753878449.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34825_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:32:18,226 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:32:18,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:32:18,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:32:18,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:32:18,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:32:18,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:32:18,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:32:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:32:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:32:18,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:32:18,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:32:18,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:32:18,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:32:18,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:32:18,415 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:32:18,415 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:32:18,416 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:32:18,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-13 05:32:18,424] [main] java.version = 17.0.2
[testng] 05:32:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:32:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:32:18,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_05-32-18.log]
[testng] 05:32:18,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-13 05:32:18,468] [main] testng.directory = /data
[testng] [2024-10-13 05:32:18,469] [main] testng.configDirectory = /config
[testng] [2024-10-13 05:32:18,477] [main] testng.multiplier = 1.0
[testng] [2024-10-13 05:32:18,477] [main] testng.in-memory = false
[testng] [2024-10-13 05:32:18,477] [main] testng.allow-missing = false
[testng] [2024-10-13 05:32:18,478] [main] user.language = en
[testng] [2024-10-13 05:32:18,478] [main] user.country = ${user.country}
[testng] [2024-10-13 05:32:18,478] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-13 05:35:17,772] [main] ----------------------------------------
[testng] [2024-10-13 05:35:17,772] [main] Total files: 15735
[testng] [2024-10-13 05:35:17,773] [main] Scan time: 179.294 s (11 ms/file)
[testng] [2024-10-13 05:35:17,773] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-13 05:37:29,998] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] 05:37:29,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:37:29,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:30,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_05-37-30.log]
[testng] 05:37:30,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6939bf0d - End of configuration.
[testng] [2024-10-13 05:37:30,585] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] 05:37:30,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:37:30,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:30,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_05-37-30.log]
[testng] 05:37:30,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fc21711 - End of configuration.
[testng] [2024-10-13 05:37:31,638] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif:
[testng] 05:37:31,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:37:31,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:31,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_05-37-31.log]
[testng] 05:37:31,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbea213 - End of configuration.
[testng] [2024-10-13 05:37:32,343] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] 05:37:32,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:37:32,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:32,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_05-37-32.log]
[testng] 05:37:32,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bbe5c - End of configuration.
[testng] [2024-10-13 05:37:34,085] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] 05:37:34,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:37:34,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:34,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_05-37-34.log]
[testng] 05:37:34,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3c886b - End of configuration.
[testng] [2024-10-13 05:37:34,900] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] 05:37:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:37:34,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:34,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_05-37-34.log]
[testng] 05:37:34,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d1dbe20 - End of configuration.
[testng] [2024-10-13 05:37:35,766] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] 05:37:35,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:37:35,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:35,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_05-37-35.log]
[testng] 05:37:35,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4032987e - End of configuration.
[testng] [2024-10-13 05:37:36,548] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif:
[testng] 05:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:37:36,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:36,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_05-37-36.log]
[testng] 05:37:36,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fa9a51 - End of configuration.
[testng] [2024-10-13 05:37:37,292] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] 05:37:37,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:37:37,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:37,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_05-37-37.log]
[testng] 05:37:37,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration.
[testng] [2024-10-13 05:37:38,036] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif:
[testng] 05:37:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:37:38,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:38,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_05-37-38.log]
[testng] 05:37:38,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration.
[testng] [2024-10-13 05:37:38,749] [pool-1-thread-3] Initializing /data/converted/michel/b.tif:
[testng] 05:37:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:37:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:38,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_05-37-38.log]
[testng] 05:37:38,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3fa18 - End of configuration.
[testng] [2024-10-13 05:37:39,407] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] 05:37:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:37:39,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:37:39,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_05-37-39.log]
[testng] 05:37:39,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b1697e - End of configuration.
[testng] [2024-10-13 05:37:59,583] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-10-13 05:38:06,251] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] [2024-10-13 05:38:07,544] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] [2024-10-13 05:38:33,154] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-10-13 05:40:42,176] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2024-10-13 05:40:47,046] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2024-10-13 05:41:00,798] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2024-10-13 05:41:18,826] [pool-1-thread-1] Initializing /data/converted/michel/e.tif:
[testng] [2024-10-13 05:42:00,703] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-10-13 05:42:26,804] [pool-1-thread-4] Initializing /data/converted/michel/a.tif:
[testng] [2024-10-13 05:42:33,892] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2024-10-13 05:42:47,021] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2024-10-13 05:43:01,160] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-10-13 05:43:19,171] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-10-13 05:43:31,465] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2024-10-13 05:43:50,999] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2024-10-13 05:43:57,425] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-10-13 05:44:02,290] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-10-13 05:44:23,546] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2024-10-13 05:44:25,074] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif:
[testng] [2024-10-13 05:44:54,676] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-10-13 05:45:17,102] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2024-10-13 05:45:18,838] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-10-13 05:45:38,659] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-10-13 05:46:03,376] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2024-10-13 05:46:11,202] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif:
[testng] [2024-10-13 05:46:26,780] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-10-13 05:46:35,878] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2024-10-13 05:46:52,592] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-10-13 05:47:14,463] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2024-10-13 05:47:46,823] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] [2024-10-13 05:48:18,426] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2024-10-13 05:48:41,088] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-10-13 05:48:58,072] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-10-13 05:49:04,782] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-10-13 05:53:36,683] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-10-13 05:54:34,431] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-10-13 05:55:16,850] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif:
[testng] [2024-10-13 05:55:49,177] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-10-13 05:55:51,169] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-10-13 05:56:35,731] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-10-13 05:56:52,300] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2024-10-13 05:57:10,866] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-10-13 05:57:31,622] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-10-13 05:57:45,171] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] [2024-10-13 06:00:15,169] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-10-13 06:02:26,808] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2024-10-13 06:05:31,241] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] [2024-10-13 06:06:38,658] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-10-13 06:08:01,629] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-10-13 06:09:42,812] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-10-13 06:10:23,018] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2024-10-13 06:16:19,973] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-10-13 06:17:05,147] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif:
[testng] [2024-10-13 06:17:29,500] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-10-13 06:17:45,792] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-10-13 06:18:46,762] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-10-13 06:21:30,111] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] [2024-10-13 06:22:15,657] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif:
[testng] [2024-10-13 06:22:19,379] [pool-1-thread-8] Initializing /data/scott/Slide133-04.tif:
[testng] [2024-10-13 06:23:08,314] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif:
[testng] [2024-10-13 06:23:28,579] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-10-13 06:26:17,226] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-10-13 06:28:18,456] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-10-13 06:28:21,263] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-10-13 06:28:24,148] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2024-10-13 06:29:22,183] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-10-13 06:29:34,892] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] [2024-10-13 06:29:44,157] [pool-1-thread-6] Initializing /data/converted/michel/c.tif:
[testng] [2024-10-13 06:30:15,317] [pool-1-thread-5] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-10-13 06:30:30,617] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-10-13 06:30:39,537] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2024-10-13 06:30:45,313] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2024-10-13 06:31:41,556] [pool-1-thread-5] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2024-10-13 06:33:53,974] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-10-13 06:35:35,227] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-10-13 06:35:38,334] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-10-13 06:36:45,297] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif:
[testng] [2024-10-13 06:38:14,565] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2024-10-13 06:39:26,751] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-10-13 06:42:20,530] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-10-13 06:42:44,995] [pool-1-thread-10] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-10-13 06:42:58,053] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2024-10-13 06:44:02,627] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-10-13 06:45:17,135] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-10-13 06:45:26,815] [pool-1-thread-10] Initializing /data/converted/lior/live+cf2b.tif:
[testng] [2024-10-13 06:45:57,316] [pool-1-thread-1] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] [2024-10-13 06:46:00,191] [pool-1-thread-5] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-10-13 06:46:12,290] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-10-13 06:46:36,443] [pool-1-thread-10] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] [2024-10-13 06:46:38,809] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-10-13 06:46:52,526] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif:
[testng] [2024-10-13 06:47:29,184] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2024-10-13 06:47:32,570] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2024-10-13 06:47:38,455] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-10-13 06:48:40,158] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2024-10-13 06:49:12,986] [pool-1-thread-10] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2024-10-13 06:49:32,503] [pool-1-thread-7] Initializing /data/converted/michel/d.tif:
[testng] [2024-10-13 06:49:44,242] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2024-10-13 06:50:13,296] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2024-10-13 06:50:22,401] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif:
[testng] [2024-10-13 06:50:45,057] [pool-1-thread-7] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-10-13 06:50:57,872] [pool-1-thread-12] Initializing /data/converted/lior/live+cf5b.tif:
[testng] [2024-10-13 06:51:05,009] [pool-1-thread-1] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-10-13 06:51:39,365] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-10-13 06:51:59,951] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-10-13 06:52:20,467] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] [2024-10-13 06:52:27,573] [pool-1-thread-4] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2024-10-13 06:52:56,312] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2024-10-13 06:53:06,755] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif:
[testng] [2024-10-13 06:53:12,097] [pool-1-thread-4] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2024-10-13 06:53:26,012] [pool-1-thread-4] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-10-13 06:53:39,417] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] 07:39:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:39:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:39:53,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_07-39-53.log]
[testng] 07:39:53,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8120 - End of configuration.
[testng] 07:44:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:44:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:44:54,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_07-44-54.log]
[testng] 07:44:54,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 132 minutes 42 seconds
Finished: SUCCESS