Started by upstream project "BIOFORMATS-test-repo" build number 219
originally caused by:
Started by upstream project "Trigger" build number 246
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2675459723358228520.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34839_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 06:00:33,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:00:33,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 06:00:33,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:00:33,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:00:33,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:00:33,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:00:33,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:00:33,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:00:33,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:00:33,433 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:00:33,434 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:00:33,434 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:00:33,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:00:33,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:00:33,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:00:33,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:00:33,642 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:00:33,642 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:00:33,642 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:00:33,643 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:00:33,643 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 06:00:33,644 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 06:00:33,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-13 06:00:33,653] [main] java.version = 17.0.2
[testng] 06:00:33,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:00:33,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:33,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_06-00-33.log]
[testng] 06:00:33,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-13 06:00:33,704] [main] testng.directory = /data
[testng] [2024-10-13 06:00:33,705] [main] testng.configDirectory = /config
[testng] [2024-10-13 06:00:33,714] [main] testng.multiplier = 1.0
[testng] [2024-10-13 06:00:33,715] [main] testng.in-memory = false
[testng] [2024-10-13 06:00:33,715] [main] testng.allow-missing = false
[testng] [2024-10-13 06:00:33,715] [main] user.language = en
[testng] [2024-10-13 06:00:33,715] [main] user.country = ${user.country}
[testng] [2024-10-13 06:00:33,715] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-13 06:01:09,049] [main] ----------------------------------------
[testng] [2024-10-13 06:01:09,050] [main] Total files: 944
[testng] [2024-10-13 06:01:09,050] [main] Scan time: 35.334 s (37 ms/file)
[testng] [2024-10-13 06:01:09,050] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-13 06:02:55,519] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 06:02:55,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:02:55,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:55,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-13_06-02-55.log]
[testng] 06:02:55,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e61af46 - End of configuration.
[testng] [2024-10-13 06:02:57,316] [pool-1-thread-12] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 06:02:57,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:02:57,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:57,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-13_06-02-57.log]
[testng] 06:02:57,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648de2ba - End of configuration.
[testng] [2024-10-13 06:02:58,839] [pool-1-thread-11] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 06:02:58,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:02:58,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:02:58,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-13_06-02-58.log]
[testng] 06:02:58,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326191 - End of configuration.
[testng] [2024-10-13 06:03:01,996] [pool-1-thread-10] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 06:03:01,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:03:01,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:01,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-13_06-03-01.log]
[testng] 06:03:01,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54977096 - End of configuration.
[testng] [2024-10-13 06:03:04,547] [pool-1-thread-9] Initializing /data/brian/Series002_z01.tif:
[testng] 06:03:04,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:03:04,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:04,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-13_06-03-04.log]
[testng] 06:03:04,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673b5110 - End of configuration.
[testng] [2024-10-13 06:03:08,081] [pool-1-thread-8] Initializing /data/primate/Leica_Image.tif:
[testng] 06:03:08,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:03:08,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:08,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-13_06-03-08.log]
[testng] 06:03:08,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd6dbb2 - End of configuration.
[testng] [2024-10-13 06:03:10,378] [pool-1-thread-7] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 06:03:10,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:03:10,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:10,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-13_06-03-10.log]
[testng] 06:03:10,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b196d81 - End of configuration.
[testng] [2024-10-13 06:03:13,120] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 06:03:13,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:03:13,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:13,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-13_06-03-13.log]
[testng] 06:03:13,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a56bb7b - End of configuration.
[testng] [2024-10-13 06:03:15,511] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 06:03:15,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:03:15,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:15,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-13_06-03-15.log]
[testng] 06:03:15,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625b1366 - End of configuration.
[testng] [2024-10-13 06:03:17,952] [pool-1-thread-4] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 06:03:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:03:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:17,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-13_06-03-17.log]
[testng] 06:03:17,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337b7eba - End of configuration.
[testng] [2024-10-13 06:03:20,347] [pool-1-thread-3] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 06:03:20,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:03:20,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:20,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-13_06-03-20.log]
[testng] 06:03:20,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@355fb2c1 - End of configuration.
[testng] [2024-10-13 06:03:22,827] [pool-1-thread-2] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 06:03:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:03:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:03:22,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-13_06-03-22.log]
[testng] 06:03:22,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b55955f - End of configuration.
[testng] [2024-10-13 06:03:39,239] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] [2024-10-13 06:03:42,662] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] [2024-10-13 06:03:47,957] [pool-1-thread-9] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 08:00:22,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:00:22,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:00:22,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-13_08-00-22.log]
[testng] 08:00:22,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78422efb - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 119 minutes 54 seconds
Finished: SUCCESS