Started by upstream project "BIOFORMATS-test-repo" build number 220
originally caused by:
Started by upstream project "Trigger" build number 247
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1895997301756609109.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34927_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:39:45,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:39:45,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 02:39:45,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:39:45,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:39:45,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:39:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:39:46,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:39:46,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:39:46,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:39:46,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:39:46,134 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:39:46,134 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:39:46,134 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:39:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:39:46,135 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 02:39:46,136 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 02:39:46,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-14 02:39:46,146] [main] java.version = 1.8.0_342
[testng] 02:39:46,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:39:46,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:39:46,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-14_02-39-46.log]
[testng] 02:39:46,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-14 02:39:46,198] [main] testng.directory = /data
[testng] [2024-10-14 02:39:46,198] [main] testng.configDirectory = /config
[testng] [2024-10-14 02:39:46,210] [main] testng.multiplier = 1.0
[testng] [2024-10-14 02:39:46,210] [main] testng.in-memory = false
[testng] [2024-10-14 02:39:46,210] [main] testng.allow-missing = false
[testng] [2024-10-14 02:39:46,211] [main] user.language = fr
[testng] [2024-10-14 02:39:46,211] [main] user.country = FR
[testng] [2024-10-14 02:39:46,211] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-14 02:40:02,502] [main] ----------------------------------------
[testng] [2024-10-14 02:40:02,502] [main] Total files: 25
[testng] [2024-10-14 02:40:02,502] [main] Scan time: 16.291 s (651 ms/file)
[testng] [2024-10-14 02:40:02,502] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-14 02:40:21,186] [pool-1-thread-1] Initializing /data/imagic/TEM 10118.dm2:
[testng] 02:40:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:40:21,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:21,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-14_02-40-21.log]
[testng] 02:40:21,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504ebfd1 - End of configuration.
[testng] [2024-10-14 02:40:21,485] [pool-1-thread-12] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 02:40:21,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:40:21,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:21,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-14_02-40-21.log]
[testng] 02:40:21,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7054967c - End of configuration.
[testng] [2024-10-14 02:40:21,774] [pool-1-thread-11] Initializing /data/pang/signed:
[testng] 02:40:21,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:40:21,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:21,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-14_02-40-21.log]
[testng] 02:40:21,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da123a8 - End of configuration.
[testng] [2024-10-14 02:40:22,103] [pool-1-thread-10] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 02:40:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:40:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-14_02-40-22.log]
[testng] 02:40:22,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d96353 - End of configuration.
[testng] [2024-10-14 02:40:22,157] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] 02:40:22,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:40:22,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-14_02-40-22.log]
[testng] 02:40:22,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763a9d0f - End of configuration.
[testng] [2024-10-14 02:40:22,427] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-14_02-40-22.log]
[testng] 02:40:22,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ca5412a - End of configuration.
[testng] [2024-10-14 02:40:22,483] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 02:40:22,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:40:22,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-14_02-40-22.log]
[testng] 02:40:22,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cad303 - End of configuration.
[testng] [2024-10-14 02:40:22,533] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2:
[testng] 02:40:22,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:40:22,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-14_02-40-22.log]
[testng] 02:40:22,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e2cc3a3 - End of configuration.
[testng] [2024-10-14 02:40:22,803] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] 02:40:22,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:40:22,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-14_02-40-22.log]
[testng] 02:40:22,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e1d044f - End of configuration.
[testng] [2024-10-14 02:40:22,854] [pool-1-thread-4] Initializing /data/pang/unproc-auto:
[testng] 02:40:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:40:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-14_02-40-22.log]
[testng] 02:40:22,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3597ecc4 - End of configuration.
[testng] [2024-10-14 02:40:23,183] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 02:40:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:40:23,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:23,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-14_02-40-23.log]
[testng] 02:40:23,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb997f7 - End of configuration.
[testng] [2024-10-14 02:40:23,232] [pool-1-thread-2] Initializing /data/pang/grating025k.dm2:
[testng] 02:40:23,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:40:23,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:23,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-14_02-40-23.log]
[testng] 02:40:23,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3572de15 - End of configuration.
[testng] [2024-10-14 02:40:26,262] [pool-1-thread-10] Initializing /data/pang/10500x-o4:
[testng] [2024-10-14 02:40:26,588] [pool-1-thread-8] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] [2024-10-14 02:40:26,863] [pool-1-thread-5] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2024-10-14 02:40:26,908] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] [2024-10-14 02:40:27,172] [pool-1-thread-7] Initializing /data/imagic/13008.dm2:
[testng] [2024-10-14 02:40:27,788] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 49 seconds
Finished: SUCCESS